SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13981

Length: 428 nt

UniGene Fasta

>biog2_v2.0_unigene13981
GTCTTCTTGGCAGGTGTTCCCCTATTCCGGTTACATATGCTGGTGGTGCAACAACTCTTGCAGACCTGGATAGTATTGGGGAAGCTGGTGCTGGATCTGTTGATGCAACAGTGGGTAGTGCTCTTGATATATTTGGCGGGAACTTGCCTTATGAGGAGGTTATTGCATGGCATCAAAAGCAGCAGATTGGTGCTTAGGAGCTAACTTCAACTCCAGTATAGAACTTCCTGAGAATAGAATTTTCGGAAACTGAAAACTAGAGGGTTTGAGCTAATGTATTTTCTAATTTAAAATGCTTTAAATTTATAATGTCAGCAAGTCTATGAGGGAAATTTCTTAGCAATTTCAATCCTTGGGGTACATTTTATTATTGACCTAGGGTATTATCATTAGCAGTTTCAATGCATATTTCCCTATTGATATTGATA

Ace file of the UniGene biog2_v2.0_unigene13981

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3347	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	BBMII isomerase [Arabidopsis thaliana]	-	-	66%
FL-Next	sp=1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	1-(5-phosphoribosyl)-5-	EC:5.3.1.16	-	0.0	84%

Source	KEGGs	Term	Identity
Blast2go	Histidine metabolism	00340	84%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	84%
Blast2go	Biosynthesis of plant hormones	01070	84%
Blast2go	Metabolic pathways	01100	84%
Blast2go	Biosynthesis of secondary metabolites	01110	84%

Source	GOs	Term	Type	Identity
Blast2go	histidine biosynthetic process	GO:0000105	Biological Process	84%
Blast2go	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	GO:0003949	Molecular Function	84%
Blast2go	chloroplast	GO:0009507	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Histidine biosynthesis	IPR006062	-	-
Sma3	Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic	IPR011858	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O82782

Fln msg: your sequence is shorter than subject: 65 - 304

Fln protein: LLGRCSPIPVTYAGGATTLADLDSIGEAGAGSVDATVGSALDIFGGNLPYEEVIAWHQKQQIGA*

Protein Length: 66

Fln nts: GTCTTCTTGGCAGGTGTTCCCCTATTCCGGTTACATATGCTGGTGGTGCAACAACTCTTGCAGACCTGGATAGTATTGGGGAAGCTGGTGCTGGATCTGTTGATGCAACAGTGGGTAGTGCTCTTGATATATTTGGCGGGAACTTGCCTTATGAGGAGGTTATTGCATGGCATCAAAAGCAGCAGATTGGTGCTTAG___GAGCTAACTTCAACTCCAGTATAGAACTTCCTGAGAATAGAATTTTCGGAAACTGAAAACTAGAGGGTTTGAGCTAATGTATTTTCTAATTTAAAATGCTTTAAATTTATAATGTCAGCAAGTCTATGAGGGAAATTTCTTAGCAATTTCAATCCTTGGGGTACATTTTATTATTGACCTAGGGTATTATCATTAGCAGTTTCAATGCATATTTCCCTATTGATATTGATA

Fln Alignment:

biogeco2_mira_c11069___LLGRCSPIPVTYAGGATTLADLDSIGEAGAGSVDATVGSALDIFGGNLPYEEVIAWHQKQ
O82782__________________LLGNYSPIPVTYAGGVTVMDDVERIKDAGKGRVDVTVGSALDIFGGNLPYKDVVAWHHKQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain