SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13963

Length: 345 nt

UniGene Fasta

>biog2_v2.0_unigene13963
AATGGGGGGATCGTTCAATGTTAGCTACCATTGCCCTAGGTGCTGCGCAATCTCCATGGGGTGTTGCGAGCGGGGCCATTGGTGGACATGTTGCTGCAACATCAATTGCTGTTGTTGGTGGAGGACTTCTTGCTCAGTATATTTCAGAAAAGTGGTTGGATATCTCGGGGGTGCATTGTTCATTGTATTCGCTATAGCAACACTACTGGGAGCTTTTTGAACATTTTATGGAGTCATTTCTCTACCATTTTTTCTGAGTCAAACTGACTTGAAGCCTAATCAATCTTGGGGCCTTTAATGAGCCCTTTGGAAAAGCATAAGAATGGTTGAACAGCTGAGCACAAC

Ace file of the UniGene biog2_v2.0_unigene13963

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6871	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Transmembrane protein TPARL, putative n=1 Tax=Ricinus communis RepID=B9RWP5_RICCO	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	uncharacterized protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	RNA-directed DNA polymerase.	EC:2.7.7.49	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	RNA-dependent DNA replication	GO:0006278	Biological Process	76%
Blast2go	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	76%
Blast2go	RNA binding	GO:0003723	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	chloroplast inner membrane	GO:0009706	Cellular Component	76%
Blast2go	mitochondrion	GO:0005739	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Uncharacterised protein family UPF0016	IPR001727	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN11

Fln msg: Overlapping hits, possible frame ERROR between 170 and 149, your sequence is shorter than subject: 73 - 357

Fln protein: WGDRSMLATIALGAAQSPWGVASGAIGGHVAATSIAVVGGGLLAQYISxxxxxxxxxALFIVFAIATLLGAF*

Protein Length: 74

Fln nts: AATGGGGGGATCGTTCAATGTTAGCTACCATTGCCCTAGGTGCTGCGCAATCTCCATGGGGTGTTGCGAGCGGGGCCATTGGTGGACATGTTGCTGCAACATCAATTGCTGTTGTTGGTGGAGGACTTCTTGCTCAGTATATTTCAxxxxxxxxxxxxxxxxxxxxxxxxxxxGCATTGTTCATTGTATTCGCTATAGCAACACTACTGGGAGCTTTTTGAACATTTTATGGAGTCATTTCTCTACCATTTTTTCTGAGTCAAACTGACTTGAAGCCTAATCAATCTTGGGGCCTTTAATGAGCCCTTTGGAAAAGCATAAGAATGGTTGAACAGCTGAGCACAAC

Fln Alignment:

biogeco2_mira_c11050___WGDRSMLATIALGAAQSPWGVASGAIGGHVAATSIAVVGGGLLAQYISExxxxxxxGALFIVFAIATLLGAF
A9NN11__________________WGDRSMLATIALGAAQSPWGVASGAIGGHVAATSIAVVGGGLLAQYISExxxxxxxGALFIVFAVATLLGAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain