SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13924

Length: 315 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13924
GGAATTGTATATTCCAACAATGTAGTGACAGTATCCACTCCAAATGGGAATGCTGAATTGACGAAAGAGAATTGTCTATGGACTGGAGTCTACATTAACCATACACAAAATAAGGTCACAAGTGTCCCATATGGTTTAGATGATACCGTATGGGATCCTGCAAAAGCAAATTTCTACCTGCAACATACTCAGCTCAAGATCTTTCTGGAAAGGCTACCTGCAAGGTAGCATTAAGGCGTCATGTTGCTTTATCTGAAACTCAAGCATCTAATGCCATTGTTGGATGTGCATGTATAGACATGTCAGATGCAGACT

Ace file of the UniGene biog2_v2.0_unigene13924 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9452	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative starch synthase [Oryza sativa Japonica Group] gb\|EAZ25012.1\| hypothetical protein OsJ_08794 [Oryza sativa Japonica Group]	-	-	45%
FL-Next	tr=Starch synthase, putative; Ricinus communis (Castor bean).	-	-	37%
Blast2go	soluble starch synthase iv-1	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	58%
Blast2go	plastid	GO:0009536	Cellular Component	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3		IPR000097	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Glycosyl transferase, family 1	IPR001296	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	Glycogen/starch synthases, ADP-glucose type	IPR011835	-	-
Sma3	Starch synthase, catalytic domain	IPR013534	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SSD8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 200 aas, your sequence is shorter than subject: 76 - 720

Fln protein: GIVYSNNVVTVSTPNGNAELTKENCLWTGVYINHTQNKVTSVPYGLDDTVWDPAKANFYLQHTQLKIFLERLPAR*

Protein Length: 77

Fln nts: GGAATTGTATATTCCAACAATGTAGTGACAGTATCCACTCCAAATGGGAATGCTGAATTGACGAAAGAGAATTGTCTATGGACTGGAGTCTACATTAACCATACACAAAATAAGGTCACAAGTGTCCCATATGGTTTAGATGATACCGTATGGGATCCTGCAAAAGCAAATTTCTACCTGCAACATACTCAGCTCAAGATCTTTCTGGAAAGGCTACCTGCAAGGTAGCATTAAGGCGTCATGTTGCTTTATCTGAAACTCAAGCATCTAATGCCATTGTTGGATGTGCATGTATAGACATGTCAGATGCAGACT

Fln Alignment:

biogeco2_mira_c10997___GIVYSNNVVTVSTPNGNAELTKENCLWTGVYINHTQNKVTSVPYGLDDTVWDPAKANF
B9SSD8__________________GIVYSNKVVIVSSIHSKSRFIQDLSHGLGPTLSIHQDKLLVTPYGFDKSTWDPSKDRF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain