SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13917

Length: 243 nt

UniGene Fasta

>biog2_v2.0_unigene13917
TAATTTATAATATCTGCCTTTTATGGTCAAGTTGTTAACCTCTCAACACACCCCTATGGTTGCCGTGTCATACAGAGGGTTTTGGAGCATTGTACAGAAGAGCAGAAAAATAATGGCATAATGGCAGAAATTCTACAATCAGCTTACAACCTTGCTCAAGATCAGTATGGAAACTATGTGACACAGCATGTGCTAGAGCATGGGAAACCCCATGAAAGAAGTGAAATCATCAGCAAACTGGCA

Ace file of the UniGene biog2_v2.0_unigene13917

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene468	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Predicted protein n=3 Tax=Physcomitrella patens subsp. patens RepID=A9SMX6_PHYPA	-	-	61%
FL-Next	sp=Pumilio homolog 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	70%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Pumilio RNA-binding repeat	IPR001313	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Domain of unknown function DUF632	IPR006867	-	-
Sma3	Domain of unknown function DUF630	IPR006868	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Nucleic acid binding NABP	IPR012940	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SS47

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 120 aas, your sequence is shorter than subject: 81 - 1003

Fln protein: *FIISAFYGQVVNLSTHPYGCRVIQRVLEHCTEEQKNNGIMAEILQSAYNLAQDQYGNYVTQHVLEHGKPHERSEIISKLA

Protein Length: 82

Fln nts: TAATTTATAATATCTGCCTTTTATGGTCAAGTTGTTAACCTCTCAACACACCCCTATGGTTGCCGTGTCATACAGAGGGTTTTGGAGCATTGTACAGAAGAGCAGAAAAATAATGGCATAATGGCAGAAATTCTACAATCAGCTTACAACCTTGCTCAAGATCAGTATGGAAACTATGTGACACAGCATGTGCTAGAGCATGGGAAACCCCATGAAAGAAGTGAAATCATCAGCAAACTGGCA

Fln Alignment:

biogeco2_mira_c10990___FIISAFYGQVVNLSTHPYGCRVIQRVLEHCTEEQKNNGIMAEILQSAYNLAQDQYGNYVTQHVLEHGKPHERSEIISKLA
Q9SS47__________________FIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain