SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13904

Length: 311 nt

UniGene Fasta

>biog2_v2.0_unigene13904
ATGGGGTGAGACCGACTCAGCAATATTGGATTTTTCATCTTCCATAAGTGGGTTTGAAATTGATGACAAGACTGCTAATAAGATGGTTGAGAACTTGAAAGAGTATGCAAGAAGTGTGGTTGAGAAAAGGCTAGGGAAGAAGCTGGGCAAGTGTTGATCCGGATGAAGGAGAGGTTTTCAAGTTTGTTTAGTCATGATTCTGATTCAATGCCAAGGGTTTGGACTGGGAAAGAAACATCCGAGCTATTACAAAAGATGCTCGTTCCAGGTCTTTGAAGCTGCTTGCTGTCATGGCTGCCTTACGTTTGGAA

Ace file of the UniGene biog2_v2.0_unigene13904

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene20669	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein SEY1, putative n=1 Tax=Ricinus communis RepID=B9SN36_RICCO	-	-	72%
FL-Next	sp=Protein ROOT HAIR DEFECTIVE 3 homolog 2; Oryza sativa subsp. japonica (Rice).	-	-	60%
Blast2go	protein root hair defective 3 homolog 1-like	-	-	84%

Source	GOs	Term	Type	Identity
Blast2go	root epidermal cell differentiation	GO:0010053	Biological Process	84%
Blast2go	cell tip growth	GO:0009932	Biological Process	84%
Blast2go	actin cytoskeleton organization	GO:0030036	Biological Process	84%
Blast2go	ER to Golgi vesicle-mediated transport	GO:0006888	Biological Process	84%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	84%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	84%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Root hair defective 3 GTP-binding	IPR008803	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q2R224

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 124 and 124, and overlapping frame ERROR between 234 and 225, Distance to subject end: 220 aas, your sequence is shorter than subject: 104 - 823

Fln protein: WGETDSAILDFSSSISGFEIDDKTANKMVENLKEYARSVVxxKAREEAGQVLIRMKERFSSLFSHDSDSMPRVxxxxxxIRAITKDARSRSLKLLAVMAALRLE

Protein Length: 105

Fln nts: ATGGGGTGAGACCGACTCAGCAATATTGGATTTTTCATCTTCCATAAGTGGGTTTGAAATTGATGACAAGACTGCTAATAAGATGGTTGAGAACTTGAAAGAGTATGCAAGAAGTGTGGTTxxxxxxAAGGCTAGGGAAGAAGCTGGGCAAGTGTTGATCCGGATGAAGGAGAGGTTTTCAAGTTTGTTTAGTCATGATTCTGATTCAATGCCAAGGGTTTGxxxxxxxxxxxxxxxCATCCGAGCTATTACAAAAGATGCTCGTTCCAGGTCTTTGAAGCTGCTTGCTGTCATGGCTGCCTTACGTTTGGAA

Fln Alignment:

biogeco2_mira_c10977___TDSAILDFSSSISGFEIDDKTANKMVENLKEYARSVVEEKAREEAGQVLIRMKERFSSLFSHDSDSMPRVxxxxx-IRAITKDARSRSLKLLAVMAALRLE
Q2R224__________________TESAILAFSASLSEFELDQTTIRKMVMELREHARSIVEEKAREEAGNVLMRMKERFSTVLSRDKDSMPRTxxxxxDIRAITREARLAALRLMSVMAAVRLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain