SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13897

Length: 484 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13897
TGTGATATCTTCAAGCGCCCATTTGCAGTCTCAGCCATCTACTGTTCCTGCCTCATAGGCTTGACTGTCCCAGCAGCACCTCATTCGCAATGGTTGAGCAGTGGAGTGGGATCGGCACCAGCTCCATCAGCACCCGCACCTCCAGTTTCAGCATCAACCTCATCACAATTCACGTACTCTGGAGTTGCATATCCTCCTGCATTAGGAACAGCTACATCCAGTGCTCCATACTTTCCTCTACCATTCCATCTCCAACAACAGCAACAACCAGAACAGCAATACCCTCAGCAGCAGCAGTATTTGATGCCACAATATCAGCCTCCAATTCAGAAGCAGTACCCTTTAGTATCACAACCTCAACAACCTGTTGCTATTCAAGCACCCCAGTACCAGTACTCCTCTTTATATCCGGCTTCAGCGTCCGTGAGTGGAATCTACTCACTTCCTCAGCAACAACAGGCTCAGCAGTTATTCCAGAAGGATG

Ace file of the UniGene biog2_v2.0_unigene13897 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene23146	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AAF63781.1\| unknown protein [Arabidopsis thaliana] dbj\|BAC42931.1\| unknown protein [Arabidopsis thaliana] gb\|AAO63991.1\| putative RRM-containing protein [Arabidopsis thaliana] gb\|AEE74089.	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	rna-binding protein 42-like	-	-	87%

Source	InterPros	Term	Type	Identity
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR015464	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LMP2

Fln msg: Overlapping hits, possible frame ERROR between 55 and 55, Distance to subject end: 162 aas, your sequence is shorter than subject: 161 - 423

Fln protein: VISSSAHLQSQPSTVPAxxGLTVPAAPHSQWLSSGVGSAPAPSAPAPPVSASTSSQFTYSGVAYPPALGTATSSAPYFPLPFHLQQQQQPEQQYPQQQQYLMPQYQPPIQKQYPLVSQPQQPVAIQAPQYQYSSLYPASASVSGIYSLPQQQQAQQLFQKD

Protein Length: 162

Fln nts: TGTGATATCTTCAAGCGCCCATTTGCAGTCTCAGCCATCTACTGTTCCTGCCxxxxxxGGCTTGACTGTCCCAGCAGCACCTCATTCGCAATGGTTGAGCAGTGGAGTGGGATCGGCACCAGCTCCATCAGCACCCGCACCTCCAGTTTCAGCATCAACCTCATCACAATTCACGTACTCTGGAGTTGCATATCCTCCTGCATTAGGAACAGCTACATCCAGTGCTCCATACTTTCCTCTACCATTCCATCTCCAACAACAGCAACAACCAGAACAGCAATACCCTCAGCAGCAGCAGTATTTGATGCCACAATATCAGCCTCCAATTCAGAAGCAGTACCCTTTAGTATCACAACCTCAACAACCTGTTGCTATTCAAGCACCCCAGTACCAGTACTCCTCTTTATATCCGGCTTCAGCGTCCGTGAGTGGAATCTACTCACTTCCTCAGCAACAACAGGCTCAGCAGTTATTCCAGAAGGATG

Fln Alignment:

biogeco2_mira_c10966___VISSSAHLQSQPSTVPASIGLTVPAAPHSQWLXXXXXXXXXXXXXXXXXXXXXXSQFTYSGVAYPPALGTATSSA-------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLVSXXXXXXXXXXXXXXYSSLYPASASVSGIYSLPXXXXXXXXXQKD
B8LMP2__________________VIASSAHLQSQPSTVPTSVGLSVPAAPHLQWLSSAAVSAPAPSAPAPPVSASTSSQFTYSGVAYPPASVTATSSAPYFPLPFHLQRQPDHLQQQQQPEQQYPQQQQYLMPQYQPQVQTQYPLVSQPQQPVAIQAPQYQYSSLYPASAPVGGIYSLPQQQQAQQLFQKD

SSRs (tot: 1)

Start position	End position	Sequence	Length
188	199	CTG CTG CTG CTG	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain