SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13888

Length: 341 nt

UniGene Fasta

>biog2_v2.0_unigene13888
GTGAGAGTGCTTCCTAGTGCAGAAGACGAGGTTAATGTAGCATGTTTTCACCCATTAGTTGGAGGAGGCCTTGTGTATGGAACAAAGGAAGGGAAACTTAGGATCCTTCAATATGATGGGACTCATGGTCCAAACTATGGAGTAAGCAGCTCTGGTATTGATCATAACATGTTTGAGGTGCAGACTGTTGCGTTGGAATGCTAATTGGTTGCTGCCATCTGATACTCTCAGAGAACAAGATGCAGAGAATCACTGTGGATTCCAATATCATGTTCAGTGAATGTGTTGGGAACAAACATCTTCACGAAGTATTGAGTCATTGCCAAATGGGAATAGCTGGA

Ace file of the UniGene biog2_v2.0_unigene13888

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8592	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleotide binding protein, putative n=1 Tax=Ricinus communis RepID=B9T5V8_RICCO	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	80%
Blast2go	protein	-	-	65%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TZ55

Fln msg: your sequence is shorter than subject: 68 - 773

Fln protein: VRVLPSAEDEVNVACFHPLVGGGLVYGTKEGKLRILQYDGTHGPNYGVSSSGIDHNMFEVQTVALEC*

Protein Length: 69

Fln nts: GTGAGAGTGCTTCCTAGTGCAGAAGACGAGGTTAATGTAGCATGTTTTCACCCATTAGTTGGAGGAGGCCTTGTGTATGGAACAAAGGAAGGGAAACTTAGGATCCTTCAATATGATGGGACTCATGGTCCAAACTATGGAGTAAGCAGCTCTGGTATTGATCATAACATGTTTGAGGTGCAGACTGTTGCGTTGGAATGCTAA___TTGGTTGCTGCCATCTGATACTCTCAGAGAACAAGATGCAGAGAATCACTGTGGATTCCAATATCATGTTCAGTGAATGTGTTGGGAACAAACATCTTCACGAAGTATTGAGTCATTGCCAAATGGGAATAGCTGGA

Fln Alignment:

biogeco2_mira_c10955___VRVLPSAEDEVNVACFHPLVGGGLVYGTKEGKLRILQYDGTHGPNYGVSSSGIDHNMFEVQTVALEC
D7TZ55__________________VRVLPSAEDEVNVACFHPSVGGGLVYGTKEGKLRILQYDSSHGMNY-TSSCFLDENMLEVPTYALEC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain