SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13862

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13862
TCTAATCTTAGGAAATGCTTTGCTGGATTATGGAGCTTGGACAATAATGCAAATGTTATAGAAGATGCCATCAGAAGGCCAGAATCATTTGTGCTGAAGCCCCAGCGTGAAGGAGGGGGAAATAACATATATGGAAATGATGTCAAGGAAAAATTACTTGAGTTGAAAAGAAATGGTGGTGATGGACATGCTGCTTACATACTAATGCAAAGGATCTTTCCTCCAATTCATGTGTCATATCTTGCCCGTGGTGGTATCTATCAACACGGTGAAACTGTGTCTGAACTTGGCATATTTGGTGCATATTTACGGAGTAAAGACAATGTGATACTAAACAACCAAAGTGGCTATCTCATGAGAACAAAAGTTTCTTCCTCCAATGAGGGTGGTGTTGCTGCAGGCTTTGCTGTTGTGGATAGTCTCTATCTAATTTGAGTTATCTTCAATTGTACCCTGTGAATTTATGGCATGGAAA

Ace file of the UniGene biog2_v2.0_unigene13862 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28223	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	Glutathione synthetase, chloroplastic n=2 Tax=Brassica RepID=GSHB_BRAJU	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	glutathione synthetase	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glutathione synthase.	EC:6.3.2.3	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glutathione metabolism	00480		0.0	80%
Blast2go	Metabolic pathways	01100		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to jasmonic acid stimulus	GO:0009753	Biological Process	80%
Blast2go	glutathione biosynthetic process	GO:0006750	Biological Process	80%
Blast2go	binding	GO:0005488	Molecular Function	80%
Blast2go	glutathione synthase activity	GO:0004363	Molecular Function	80%
Blast2go	cytosol	GO:0005829	Cellular Component	80%
Blast2go	chloroplast	GO:0009507	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Glutathione synthase, substrate-binding, eukaryotic	IPR004887	-	-
Sma3	Glutathione synthase, eukaryotic	IPR005615	-	-
Sma3	ATP-grasp fold, subdomain 2	IPR013816	-	-
Sma3	Glutathione synthase, alpha-helical, eukaryotic	IPR014042	-	-
Sma3	Glutathione synthase, C-terminal, eukaryotic	IPR014709	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8U7

Fln msg: your sequence is shorter than subject: 145 - 187

Fln protein: SNLRKCFAGLWSLDNNANVIEDAIRRPESFVLKPQREGGGNNIYGNDVKEKLLELKRNGGDGHAAYILMQRIFPPIHVSYLARGGIYQHGETVSELGIFGAYLRSKDNVILNNQSGYLMRTKVSSSNEGGVAAGFAVVDSLYLI*

Protein Length: 146

Fln nts: TCTAATCTTAGGAAATGCTTTGCTGGATTATGGAGCTTGGACAATAATGCAAATGTTATAGAAGATGCCATCAGAAGGCCAGAATCATTTGTGCTGAAGCCCCAGCGTGAAGGAGGGGGAAATAACATATATGGAAATGATGTCAAGGAAAAATTACTTGAGTTGAAAAGAAATGGTGGTGATGGACATGCTGCTTACATACTAATGCAAAGGATCTTTCCTCCAATTCATGTGTCATATCTTGCCCGTGGTGGTATCTATCAACACGGTGAAACTGTGTCTGAACTTGGCATATTTGGTGCATATTTACGGAGTAAAGACAATGTGATACTAAACAACCAAAGTGGCTATCTCATGAGAACAAAAGTTTCTTCCTCCAATGAGGGTGGTGTTGCTGCAGGCTTTGCTGTTGTGGATAGTCTCTATCTAATTTGA___GTTATCTTCAATTGTACCCTGTGAATTTATGGCATGGAAA

Fln Alignment:

biogeco2_mira_c10920___SNLRKCFAGLWSLDNNANVIEDAIRRPESFVLKPQREGGGNNIYGNDVKEKLLELKRNGGDGHAAYILMQRIFPPIHVSYLARGGIYQHGETVSELGIFGAYLRSKDNVILNNQSGYLMRTKVSSSNEGGVAAGFAVVDSLYL
D5A8U7__________________ANLRKCFAGLWSLDNNANVIEDAIRRPEAFVLKPQREGGGNNIYGNDAKEKLLEMKRNGGDGHAAYILMQRIFPPFHVSYLVRGGIYHHGETFSELGIFGAYLRNKDNVLLNNQSGYLMRTKISSSDEGGVAAGFAVVDSLYL

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
280	75			25	0.996473
281	75	25			0.996474
282		25	75		0.996474
283		75		25	0.996473
284	75			25	0.996473
285	25		75		0.996474
286	25	75			0.996477
289			66	33	0.997452
291		75	25		0.996473
304		25		75	0.996475

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain