SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13853

Length: 379 nt

UniGene Fasta

>biog2_v2.0_unigene13853
CTAACCTACTTGGATCTTCACACCAATGAATTTACAGGTACCATAGTTCCAGAGCTTGGTAGTCTTTCACAACTCATATACTTGGACATTTCTGATAATTATCTCATAGGATCAGTCCCCGATGAATTGTGCGATCTTATGGATCTCAACTTCTTCAATCTCTCGGCTAATCTGCTGGAAGGAGCTCTCCCTGAGGGCGGTGGATGTAGTAATTTTACTGCTTCTTCATTTCTTAGAAACAAGGCTGTATGTGGAAATCTAATGGGCCAAAAATGCAAGCTCAGTCCAAGACAACAGCCTCATCTATTGAGCACCGGGTTGATTGTTGGGATCACAATAGGAAGCACCCTTTTCGTGCTGGGCCTTATATTTGCTTTGG

Ace file of the UniGene biog2_v2.0_unigene13853

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene41245	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase (Fragment) n=1 Tax=Marchantia polymorpha RepID=A7VM26_MARPO	-	-	6.0e-30	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	protein	-	-	1.07557e-34	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	microsporogenesis	GO:0009556	Biological Process	1.07557e-34	58%
Blast2go	tapetal cell fate specification	GO:0010234	Biological Process	1.07557e-34	58%
Blast2go	protein binding	GO:0005515	Molecular Function	1.07557e-34	58%
Blast2go	catalytic activity	GO:0003824	Molecular Function	1.07557e-34	58%
Blast2go	membrane	GO:0016020	Cellular Component	1.07557e-34	58%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 126 - 818

Fln protein: LTYLDLHTNEFTGTIVPELGSLSQLIYLDISDNYLIGSVPDELCDLMDLNFFNLSANLLEGALPEGGGCSNFTASSFLRNKAVCGNLMGQKCKLSPRQQPHLLSTGLIVGITIGSTLFVLGLIFAL

Protein Length: 127

Fln nts: CTAACCTACTTGGATCTTCACACCAATGAATTTACAGGTACCATAGTTCCAGAGCTTGGTAGTCTTTCACAACTCATATACTTGGACATTTCTGATAATTATCTCATAGGATCAGTCCCCGATGAATTGTGCGATCTTATGGATCTCAACTTCTTCAATCTCTCGGCTAATCTGCTGGAAGGAGCTCTCCCTGAGGGCGGTGGATGTAGTAATTTTACTGCTTCTTCATTTCTTAGAAACAAGGCTGTATGTGGAAATCTAATGGGCCAAAAATGCAAGCTCAGTCCAAGACAACAGCCTCATCTATTGAGCACCGGGTTGATTGTTGGGATCACAATAGGAAGCACCCTTTTCGTGCTGGGCCTTATATTTGCTTTGG

Fln Alignment:

biogeco2_mira_c10911___LTYLDLHTNEFTGTIVPELGSLSQLIYLDISDNYLIGSVPDELCDLMDLNFFNLSANLLEGALPEGGGCSNFTASSFLRNKAVCGNLMGQKCKLSPRQQPHLLSTGLIVGITIG
B8LQX6__________________LRLLNLSRNQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLASLNVSSNRLCGRIPLGTQFDTFNATSFQNNKCLCGFPL-QACKSMENETP----KGMMVGVSHG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain