SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13812

Length: 474 nt

UniGene Fasta

>biog2_v2.0_unigene13812
TCAATTCAAGATGGTGAACTTGCAGCTTTGGCAAGCTGATGCTGGAAAGTTTGCCATAGAGAAACATCTCTTGGAGCAAGCACCTCGAGTGAGGACAAAATGCAGACTCGTGCTCATTTAGAGGCCCAGATAGCATCGGCTATGGCGCTGAAGGTCCCCTATTGAATACCGGCAATGTCTTTTGTCTTATACTCGTTGTCTTGCAAGGGAAGCAGATGAGCGCCGCCTACGAGAAGTCTGTGAGGAATTGCTTGGTCCACCAGCTGGAATGATAAGATCTACGCCATCAGATTCCATTGCAACATCATGGGACCCACACATTCTGGGAATGAAAAAGCATGACCTTCTTAGAGAAGACGTTCTTCCAGCATTGGCATCAAACAGGAAGGTTCAACGGCTGCTTAATGAGTTTCTTGATTTACTTTCTGAATATAAAACCAGAGAACCAAATTTACACAATGAACAAGTCAAAGT

Ace file of the UniGene biog2_v2.0_unigene13812

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9892	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Protein HIRA; AltName: Full=Histone regulator protein emb\|CAB88535.1\| WD repeat domain protein [Arabidopsis thaliana]	-	-	54%
FL-Next	sp=Protein HIRA; Arabidopsis thaliana (Mouse-ear cress).	-	-	44%
Blast2go	protein hira	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	76%
Blast2go	negative regulation of gene expression, epigenetic	GO:0045814	Biological Process	76%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	76%
Blast2go	protein binding	GO:0005515	Molecular Function	76%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	76%
Blast2go	nucleus	GO:0005634	Cellular Component	76%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	TUP1-like enhancer of split	IPR011494	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXN4

Fln msg: Overlapping hits, possible frame ERROR between 159 and 155, Distance to subject end: 69 aas, your sequence is shorter than subject: 158 - 1051

Fln protein: SIQDGELAALAS*CWKVCHRETSLGASTSSEDKMQTRAHLEAQIASAMALKxxxIEYRQCLLSYTRCLAREADERRLREVCEELLGPPAGMIRSTPSDSIATSWDPHILGMKKHDLLREDVLPALASNRKVQRLLNEFLDLLSEYKTREPNLHNEQVK

Protein Length: 159

Fln nts: TCAATTCAAGATGGTGAACTTGCAGCTTTGGCAAGCTGATGCTGGAAAGTTTGCCATAGAGAAACATCTCTTGGAGCAAGCACCTCGAGTGAGGACAAAATGCAGACTCGTGCTCATTTAGAGGCCCAGATAGCATCGGCTATGGCGCTGAAGxxxxxxxxxATTGAATACCGGCAATGTCTTTTGTCTTATACTCGTTGTCTTGCAAGGGAAGCAGATGAGCGCCGCCTACGAGAAGTCTGTGAGGAATTGCTTGGTCCACCAGCTGGAATGATAAGATCTACGCCATCAGATTCCATTGCAACATCATGGGACCCACACATTCTGGGAATGAAAAAGCATGACCTTCTTAGAGAAGACGTTCTTCCAGCATTGGCATCAAACAGGAAGGTTCAACGGCTGCTTAATGAGTTTCTTGATTTACTTTCTGAATATAAAACCAGAGAACCAAATTTACACAATGAACAAGTCAAAGT

Fln Alignment:

biogeco2_mira_c10858___GELAALAS*CWKVCHRETSLGASTSSEDKMQTRAHLEAQIASAMALKxxIEYRQCLLSYTXXXXXXXXXXXXXXXXXXXXGPPAGMIRSTPSDSIATSWDPHILGMKKHDLLREDVLPALASNRKVQRLLNEFLDLLSEYKTRE
Q9LXN4__________________GELAGLQVDVRKYMARKP--GWNRITDDGTQTRAHLESQLASSLALExxNEYRQCLLAYVRFLAREADESRLREVCESFLGPPTGMAEAASSDT-NLSWDPYVLGVKKHKLLRNDILPAMASNRKVQRLLNEFIDLLSEYEDVE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain