SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13808

Length: 518 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13808
ATCTGGCCAATCTCACAGTGGCCTGCAGCAATCTCACTGGTCCATTACCTTGTGAGATCACCGATATTCAGGGCCTGAGGTTCCTGAATATCTCCAACAATGTCTTCATTGGCAATTTCCCTTCCAACGTTTCCAAATGGAAGGAACTGGAGGTCATGGATGCCTACAACAACAACTTCTCCGGGCCGTTGCCAGTGGAATTCAGCAAGTTGAGGAAGCTGAAGCATCTGCACTTGGGAGGCAACTATTTTTCTGGCAAGATTCCAAGCGAGTATTCCCATATCACAAGCTTGAATTATCTGGCACTCGCAGGAAATGAGTTGACTGGAAGAATCCCAGGTGAGCTTACTAGGCTTGTTAATCTTGAGGAACTCTACATTGGCTATTATAACAATTACCAAAGTGAAATTCCCTCAGAATTTGGGGAGTTCACAAATCTTGTTCGGCTGGACATGGCTAATTGTGGGCTAGTTGGGTCTATTCCACCAGAGCTAGGCCAACTGGTTAAGCTGGACTCA

Ace file of the UniGene biog2_v2.0_unigene13808 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene37341	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	LRR receptor-like protein kinase (Fragment) n=3 Tax=Pseudotsuga RepID=C6F817_PSEMZ	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	28%
Blast2go	lrr receptor-like protein kinase	-	-	72%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQX6

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 172 - 818

Fln protein: LANLTVACSNLTGPLPCEITDIQGLRFLNISNNVFIGNFPSNVSKWKELEVMDAYNNNFSGPLPVEFSKLRKLKHLHLGGNYFSGKIPSEYSHITSLNYLALAGNELTGRIPGELTRLVNLEELYIGYYNNYQSEIPSEFGEFTNLVRLDMANCGLVGSIPPELGQLVKLDS

Protein Length: 173

Fln nts: ATCTGGCCAATCTCACAGTGGCCTGCAGCAATCTCACTGGTCCATTACCTTGTGAGATCACCGATATTCAGGGCCTGAGGTTCCTGAATATCTCCAACAATGTCTTCATTGGCAATTTCCCTTCCAACGTTTCCAAATGGAAGGAACTGGAGGTCATGGATGCCTACAACAACAACTTCTCCGGGCCGTTGCCAGTGGAATTCAGCAAGTTGAGGAAGCTGAAGCATCTGCACTTGGGAGGCAACTATTTTTCTGGCAAGATTCCAAGCGAGTATTCCCATATCACAAGCTTGAATTATCTGGCACTCGCAGGAAATGAGTTGACTGGAAGAATCCCAGGTGAGCTTACTAGGCTTGTTAATCTTGAGGAACTCTACATTGGCTATTATAACAATTACCAAAGTGAAATTCCCTCAGAATTTGGGGAGTTCACAAATCTTGTTCGGCTGGACATGGCTAATTGTGGGCTAGTTGGGTCTATTCCACCAGAGCTAGGCCAACTGGTTAAGCTGGACTCA

Fln Alignment:

biogeco2_mira_c10854___LANLTVACSNLTGPLPCEITDIQGLRFLNISNNVFIGNFPSNVSKWKELEVMDAYNNNFSGPLPVEFSXXXXXXXXXLGGNYFSGKIPSEYSHITSLNYLA-----------------------------------LAGNELTGRIPGELTRLVNLEELYIGYYNNYQSEIPSEFGEFTNLVRLDMANCGLVGSIPPELGQLVKLDS
B8LQX6__________________LTSLTLNQNNFTGGIPEVIDNFSQLQLLDLSKNGFTGQIPGYLASLQELRVLSVAYNKLHGDIPASITNLTQLQVLDLSNNRISGRIPRDLERLQGFKILASSKLSSNTLYEDLDIVIKGFEYTLTYVLATNTIFDLSSNNLTGEIPASIGNLSTLRLLNLSR-NQLEGKIPASLGQISTLEQLDLANNYFSGKIPQELSNLTMLAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain