SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13805

Length: 349 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13805
CCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCCTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGACATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGCTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTA

Ace file of the UniGene biog2_v2.0_unigene13805 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21488	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	putative alanine aminotransferase [Arabidopsis thaliana]	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	alanine aminotransferase	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Alanine transaminase.	EC:2.6.1.2	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	88%
Blast2go	Carbon fixation in photosynthetic organisms	00710	88%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	88%
Blast2go	L-alanine catabolic process, by transamination	GO:0019481	Biological Process	88%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	88%
Blast2go	copper ion binding	GO:0005507	Molecular Function	88%
Blast2go	L-alanine:2-oxoglutarate aminotransferase activity	GO:0004021	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	protein binding	GO:0005515	Molecular Function	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	88%
Blast2go	chloroplast	GO:0009507	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	1-aminocyclopropane-1-carboxylate synthase	IPR001176	-	-
Sma3	Pyridoxal phosphate-dependent decarboxylase	IPR002129	-	-
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXT3

Fln msg: Distance to subject end: 333 aas, your sequence is shorter than subject: 116 - 480

Fln protein: PFDEIIYCNIGNPQSLGQQPVTFFREVLALCDHPALLDKDETHGIFSSDSISRAWQILDGIPGRATGAYSHSQGIKTLRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLL

Protein Length: 117

Fln nts: CCTTTTGATGAGATTATTTACTGTAATATTGGCAATCCACAATCCCTAGGTCAACAGCCTGTAACATTTTTCCGAGAGGTGCTAGCTTTATGTGACCATCCAGCTCTTTTGGACAAAGATGAAACACATGGCATCTTTAGTTCTGATTCCATATCGAGGGCATGGCAAATTCTAGATGGCATTCCAGGAAGAGCTACTGGAGCTTACAGTCACAGTCAGGGTATCAAGACATTACGTGATGCAATTGCTGCTGGTATTGCTGAACGTGATGGCTTTCCATCCAATTCAGAGGACCTTTTTTTGACTGATGGTGCAAGTCCTGGGGTTCATATGATGATGCAACTTCTTA

Fln Alignment:

biogeco2_mira_c10850___EIIYCNIGNPQSLGQQPVTFFREVLALCDHPALLDKDETHGIFSSDSISRAWQILDGIPGRATGAYSHSQGIKTLRDAIAAGIAERDGFPSNSEDLFLTDGASPGVHMMMQLL
A9NXT3__________________KIIFTNVGNPQALGQRPLTFPRQVMALCQAPMLMDDPNVSILFPADVIARAKHYLAMTTG-GLGAYSDSRGLPGIRKEVAEFIERRDGYPSDPDLIFLTDGASKGV---MQIL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain