SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13750

Length: 282 nt

UniGene Fasta

>biog2_v2.0_unigene13750
AGAAGGGTACAGGTCAATTGGTTGTATTGCTGTAGCAGGTTATGTGGAACCAGAACCAAGCACCATATTCTGTGTGCATTCAACTCTTGTTGAAGAGAGCATGTTTGAAGATGAACCAATATGGACTGCCCCGGGTGCATATCCATGGGCTTGCTACCTTTATCAGGTTCAAAGTGAGGCTTTGCACTTTGTTGCTCGAAGACAGAGGAAAGAAGAGTCAAGGTGGAGGCCTTGTAAAGTAGTCGAGTATAGAGACCCTTCAGTGTAACTTGTAATTATTTC

Ace file of the UniGene biog2_v2.0_unigene13750

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene203	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	vacuolar protein sorting 13C protein-like [Oryza sativa Japonica Group] dbj\|BAD19586.1\| vacuolar protein sorting 13C protein-like [Oryza sativa Japonica Group]	-	-	8.0e-33	38%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	55%
Blast2go	pleckstrin homology domain-containing protein	-	-	0.0	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	63%

Source	InterPros	Term	Type	Identity
Sma3	C2 calcium-dependent membrane targeting	IPR000008	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Vacuolar protein sorting-associated protein	IPR009543	-	-
Sma3	Pleckstrin homology-like domain	IPR011993	-	-
Sma3	C-type lectin, conserved site	IPR018378	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9MTV9

Fln msg: your sequence is shorter than subject: 89 - 389

Fln protein: EGYRSIGCIAVAGYVEPEPSTIFCVHSTLVEESMFEDEPIWTAPGAYPWACYLYQVQSEALHFVARRQRKEESRWRPCKVVEYRDPSV*

Protein Length: 90

Fln nts: AGAAGGGTACAGGTCAATTGGTTGTATTGCTGTAGCAGGTTATGTGGAACCAGAACCAAGCACCATATTCTGTGTGCATTCAACTCTTGTTGAAGAGAGCATGTTTGAAGATGAACCAATATGGACTGCCCCGGGTGCATATCCATGGGCTTGCTACCTTTATCAGGTTCAAAGTGAGGCTTTGCACTTTGTTGCTCGAAGACAGAGGAAAGAAGAGTCAAGGTGGAGGCCTTGTAAAGTAGTCGAGTATAGAGACCCTTCAGTGTAA___CTTGTAATTATTTC

Fln Alignment:

biogeco2_mira_c10782___EGYRSIGCIAVAGYVEPEPSTIFCVHSTLVEESMFEDEPIWTAPGAYPWACYLYQVQSEALHFVARRQRKEESRWRPCKVVEYRDP
B9MTV9__________________EGYVSPGCVAVSNFEEPEPCSVYCVAESLVEETEFEEQKVWSAPDSYPWACHIYQVRSDALHFVALRQTKEESDWKPMRVADNLPP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain