SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13726

Length: 358 nt

UniGene Fasta

>biog2_v2.0_unigene13726
ATGGGTGTTATATTGTAATTATACCTTTTGGCACTGCCATGAAATGAGCTCTGTTGCAGGGATTAACCTTATTGACTGCATCGGTCTCCTTTAAATTTCTGAGACCACCCCCATGTATTTACACTTCAAGCTCTTGCTCAGAAGCCACACCTGTTCAGAATGGGCTTTTTTCTGCTCACTTTATTGATAGCATTGGGAACAGGAGGCCATAAACCTTGTATAGAAGCATTTGGTGCGGACCAGTTTGATGGTGAAGACCCAGAAGAGAACAGATATAGGAGTTCCTTCTTTAATTGGTGGTACTTTGGACAGTGTTTTGGTGCTTTGATTGCACTTACGGTACTTCTTTACGTTGAAG

Ace file of the UniGene biog2_v2.0_unigene13726

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6966	1/2
SustainPine v2.0	sp_v2.0_unigene33076	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	67%
Blast2go	transporter activity	GO:0005215	Molecular Function	67%
Blast2go	membrane	GO:0016020	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NWU3

Fln msg: Separated hits, possible frame ERROR between 170 and 208, Unexpected stop codon in the beginning of your sequence, Distance to subject end: 373 aas, your sequence is shorter than subject: 119 - 604

Fln protein: GCYIVIIPFGTAMK*ALLQGLTLLTASVSFKFLRPPPCIYTSSSCSEATPVQNGLxxxxxxxxxxxxxxHKPCIEAFGADQFDGEDPEENRYRSSFFNWWYFGQCFGALIALTVLLYVE

Protein Length: 120

Fln nts: ATGGGTGTTATATTGTAATTATACCTTTTGGCACTGCCATGAAATGAGCTCTGTTGCAGGGATTAACCTTATTGACTGCATCGGTCTCCTTTAAATTTCTGAGACCACCCCCATGTATTTACACTTCAAGCTCTTGCTCAGAAGCCACACCTGTTCAGAATGGGCTTTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCATAAACCTTGTATAGAAGCATTTGGTGCGGACCAGTTTGATGGTGAAGACCCAGAAGAGAACAGATATAGGAGTTCCTTCTTTAATTGGTGGTACTTTGGACAGTGTTTTGGTGCTTTGATTGCACTTACGGTACTTCTTTACGTTGAAG

Fln Alignment:

biogeco2_mira_c10751___SVSFKFLRPPPCIYTSSSCSEATPVQNGLFxxxxxxxxxxxxxHKPCIEAFGADQFDGEDPEENRYRSSFFNWWYFGQCFGALIALTVLLYVE
A9NWU3__________________SASLSSFRPPPCDITSYTCLKASGSQVGFFxxxxxxxxxxxxxHKPCLQAFGADQFDERDPEERKYRSSFFNWWYFGMCSGLVVSISVLMYIQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain