SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13711

Length: 204 nt

UniGene Fasta

>biog2_v2.0_unigene13711
ATGGGCACTGTTGAATCCACAGGAGCACTCAAAGCTTCTCAGATGCTTCTTAATGCTATTGATATTCTTAAACATAAACTTGAAACAGTTCGGCTGTCGCCAGAAACTGAAGAAGATGACGCACAATTCATTGATCTAGAGCAGCACATGCGAGGCGGAGGTGGAAGATGATCATGATGCGTAGTTGGTATCTAACTTGTACCA

Ace file of the UniGene biog2_v2.0_unigene13711

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9429	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	RNA polymerase, dimerisation [Medicago truncatula]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	dna-directed rna polymerase third largest subunit	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	83%
Blast2go	Pyrimidine metabolism	00240	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	83%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	83%
Blast2go	cytoplasm	GO:0005737	Cellular Component	83%
Blast2go	nucleolus	GO:0005730	Cellular Component	83%
Blast2go	DNA-directed RNA polymerase II, core complex	GO:0005665	Cellular Component	83%
Blast2go	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	83%
Blast2go		GO:0080137	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, 30-40kDa subunit, conserved site	IPR001514	-	-
Sma3	DNA-directed RNA polymerase, dimerisation	IPR011261	-	-
Sma3	DNA-directed RNA polymerase, insert domain	IPR011262	-	-
Sma3	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	IPR011263	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADF1

Fln msg: your sequence is shorter than subject: 57 - 330

Fln protein: MGTVESTGALKASQMLLNAIDILKHKLETVRLSPETEEDDAQFIDLEQHMRGGGGR*

Protein Length: 58

Fln nts: ATGGGCACTGTTGAATCCACAGGAGCACTCAAAGCTTCTCAGATGCTTCTTAATGCTATTGATATTCTTAAACATAAACTTGAAACAGTTCGGCTGTCGCCAGAAACTGAAGAAGATGACGCACAATTCATTGATCTAGAGCAGCACATGCGAGGCGGAGGTGGAAGATGA___TCATGATGCGTAGTTGGTATCTAACTTGTACCA

Fln Alignment:

biogeco2_mira_c10733___TVESTGALKASQMLLNAIDILKHKLETVRLSPETEEDDAQFIDLEQHM
D5ADF1__________________TIESTGALKASQMLLNAIDILKQKLETVRLSPETEEDDAQFIDLEQHM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain