SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13696

Length: 236 nt

UniGene Fasta

>biog2_v2.0_unigene13696
GCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCT

Ace file of the UniGene biog2_v2.0_unigene13696

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28917	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	kinesin family member 2/24 [Arabidopsis thaliana] ref\|NP_850598.1\| kinesin family member 2/24 [Arabidopsis thaliana] gb\|AAL07208.1\| putative kinesin protein [Arabidopsis thaliana] dbj\|BAE98696.1\| kinesin like protein [Arabidopsis thaliana] gb\|AEE75845.1\|	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	73%
Blast2go	kinesin family member 2 24	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	74%
Blast2go	Golgi stack	GO:0005795	Cellular Component	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	74%
Blast2go	microtubule	GO:0005874	Cellular Component	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sterile alpha motif domain	IPR001660	-	0.0	-
Sma3	Kinesin, motor domain	IPR001752	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D7T6C8

Fln msg: Distance to subject end: 698 aas, your sequence is shorter than subject: 78 - 815

Fln protein: ARWLQSAGLQHLAPMASTGMDHRLLPNLLMQGYGAQSLDEKQKLFKFFKGMNLGAESGSEPITPTAQSSAGLAATDGF

Protein Length: 79

Fln nts: GCTCGCTGGCTTCAGTCCGCTGGTCTGCAGCATCTGGCCCCTATGGCGTCTACGGGCATGGATCACCGTCTCCTACCGAATCTGTTAATGCAGGGTTACGGGGCACAATCATTGGACGAAAAACAGAAGCTGTTCAAGTTCTTCAAGGGCATGAATTTAGGTGCAGAGTCTGGATCTGAGCCAATCACTCCTACAGCTCAGAGTTCTGCAGGACTGGCTGCTACGGATGGCTTCCT

Fln Alignment:

biogeco2_mira_c10712___ARWLQSAGLQHLA-PMASTGMDHRLLPNLLMQGYGAQSLDEKQKLFKFFKGMNLGAESGSEPITPTAQSSAGLAATDGF
D7T6C8__________________ARWLQSAGLQHLASPLASTGIDHRLLPNLLMQGYGAQSAEEKQRLFKLMRNLNFNGESGSEPYTPTAQTS-GVVASEGF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain