SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13692

Length: 356 nt

UniGene Fasta

>biog2_v2.0_unigene13692
AGGAGATTTTAAGTTGGTCCAAACGTATTGAAATTCTACTCTCTGTTGCACAAGGACTAGATTATTTACACTCTTTTAGTGAACCTCCTGTGATACATAGGGATATCAAGCCAAGTAACATATTACTGGATGATCACTTCAATGCTAAATTATCAGATTTTGGCATCTCTAAGAGTGCGGCAGAACTCTTTAATACTCATATTTCTACTGGGCCAGCTGGCACCTTTGGGTATTTAGATCCACAATACTTCTTGAGACAGCAACTAACACCAGCAAGTGATGTGTACAGCTTTGGGATCGTTTTGCTTGTGCTTGTTTCAGGACAAAGGGCCATTGATCATAATCGCACAGATGAC

Ace file of the UniGene biog2_v2.0_unigene13692

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12934	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM34_MARPO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	phosphorylation	GO:0016310	Biological Process	71%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	71%
Blast2go	response to brassinosteroid stimulus	GO:0009741	Biological Process	71%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	71%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	71%
Blast2go	plasma membrane	GO:0005886	Cellular Component	71%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	RNA polymerase II, heptapeptide repeat, eukaryotic	IPR000684	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	TNFR/CD27/30/40/95 cysteine-rich region	IPR001368	-	-
Sma3	Actinin-type, actin-binding, conserved site	IPR001589	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Regulator of chromosome condensation/beta-lactamase-inhibitor protein II	IPR009091	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Heat shock protein 70, conserved site	IPR018181	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW8

Fln msg: Distance to subject end: 128 aas, your sequence is shorter than subject: 118 - 465

Fln protein: EILSWSKRIEILLSVAQGLDYLHSFSEPPVIHRDIKPSNILLDDHFNAKLSDFGISKSAAELFNTHISTGPAGTFGYLDPQYFLRQQLTPASDVYSFGIVLLVLVSGQRAIDHNRTDD

Protein Length: 119

Fln nts: AGGAGATTTTAAGTTGGTCCAAACGTATTGAAATTCTACTCTCTGTTGCACAAGGACTAGATTATTTACACTCTTTTAGTGAACCTCCTGTGATACATAGGGATATCAAGCCAAGTAACATATTACTGGATGATCACTTCAATGCTAAATTATCAGATTTTGGCATCTCTAAGAGTGCGGCAGAACTCTTTAATACTCATATTTCTACTGGGCCAGCTGGCACCTTTGGGTATTTAGATCCACAATACTTCTTGAGACAGCAACTAACACCAGCAAGTGATGTGTACAGCTTTGGGATCGTTTTGCTTGTGCTTGTTTCAGGACAAAGGGCCATTGATCATAATCGCACAGATGAC

Fln Alignment:

biogeco2_mira_c10707___LSWSKRIEILLSVAQGLDYLHSFSEPPVIHRDIKPSNILLDDHFNAKLSDFGISKSAAELFNTHISTGPAGTFGYLDPQYFLRQQLTPASDVYSFGIVLLVLVSGQRAIDHNR
A9NUW8__________________LPWSIRMKIALGAAKGLAFLHGGAERPVIYRDFKTSNILLDSEYNAKLSDFGLAKDGPEGDNTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLELLTGRRSMDKNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain