SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13648

Length: 318 nt

UniGene Fasta

>biog2_v2.0_unigene13648
ATGGGGAGCCCAGCCCAGCCCAGCCCCAACTTTTACTAGTTTGCGGTAATTTGTCTCTGGATGAAAATGGCAGGTAGAGCAATTACAGGGTAGGTGGATTTTGGCTTCAGGGTGTGGTGTAATGGAGGTGAAGGAGGAAGGCGGTCACGAGAGGAGGATGTTTGTGGAGGCGGAGAATGTTGAGCCCATCATTGCCAGAATCGAACACAAGTCTCGTCAGGTGGAACGCTTGCTAAGACTATCTCGGTATACAGAGGCTCTGAAAACTGCATTGGAGGATGCTCCGACAAAAACGAGGACGAGAGATGCAAGGTTACT

Ace file of the UniGene biog2_v2.0_unigene13648

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17306	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	Actin-related protein 2/3 complex subunit 5 n=1 Tax=Picea sitchensis RepID=D5ADS7_PICSI	-	-	92%
FL-Next	sp=Actin-related protein 2/3 complex subunit 5; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	actin-related protein 2 3 complex subunit 5-like	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	multidimensional cell growth	GO:0009825	Biological Process	86%
Blast2go	trichome morphogenesis	GO:0010090	Biological Process	86%
Blast2go	actin filament polymerization	GO:0030041	Biological Process	86%
Blast2go	catalytic activity	GO:0003824	Molecular Function	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	e value	Identity
Sma3	ARP2/3 complex 16kDa subunit (p16-Arc)	IPR006789	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADS7

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 65 - 142

Fln protein: MEVKEEGGHERRMFVEAENVEPIIARIEHKSRQVERLLRLSRYTEALKTALEDAPTKTRTRDARL

Protein Length: 66

Fln nts: ATGGGGAGCCCAGCCCAGCCCAGCCCCAACTTTTACTAGTTTGCGGTAATTTGTCTCTGGATGAAAATGGCAGGTAGAGCAATTACAGGGTAGGTGGATTTTGGCTTCAGGGTGTGGTGTA_-_ATGGAGGTGAAGGAGGAAGGCGGTCACGAGAGGAGGATGTTTGTGGAGGCGGAGAATGTTGAGCCCATCATTGCCAGAATCGAACACAAGTCTCGTCAGGTGGAACGCTTGCTAAGACTATCTCGGTATACAGAGGCTCTGAAAACTGCATTGGAGGATGCTCCGACAAAAACGAGGACGAGAGATGCAAGGTTACT

Fln Alignment:

biogeco2_mira_c10654___MEVKEEGGHERRMFVEAENVEPIIARIEHKSRQVERLLRLSRYTEALKTALEDAPTKTR
D5ADS7__________________MEEKEEGGHERMMFVEAENAEAIIARIEHKSRQVERLLRLSRHTEALKTALEDSPTRTK

SSRs (tot: 1)

Start position	End position	Sequence	Length
7	26	AGCCC AGCCC AGCCC AGCCC	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain