SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13611

Length: 412 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13611
AGTCGAGGGAGTAGGAAGTGAGTACAAGCTTCGATGGGCTGCCTACGGGATAGGAAGTGAGTACAAGCTTCAATGGGTTGCATACATTCAAAAAATGCTAAGCGGAAGGAAAATGACAGAGACGAGTATGTCGTCACTCACATTGAAGATAATTCTGCGGAGGGTGAAGCTGAAGGAGGTATTGGAGTAGATAGGGTAGGCTCCTTAGACTTGGATGCCAGAGTTCCCCGTCTCTCCAGATTGTCGGCCCAGTTTCTACCTTCAAGCGGATCAAGAGTTGCACAGGTTCCGGCCTTTAATTTTGAATTGAAGTACTCTTACCTTTCACAGAGGGGGTACTATCCCGAATCTCTCGACAAAGCAAACCAGGATAGCTTCTGCATACATATGCAGTTTGGGAATAACATAAACG

Ace file of the UniGene biog2_v2.0_unigene13611 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33338	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein phosphatase 2C [Arabidopsis thaliana]	-	-	4.0e-27	63%
FL-Next	sp=Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Blast2go	protein phosphatase 2c and cyclic nucleotide-binding kinase domain-containing protein	-	-	5.44622e-32	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	5.44622e-32	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.44622e-32	69%

Source	InterPros	Term	Type	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	cAMP/cGMP-dependent protein kinase	IPR002373	-	-
Sma3		IPR014045	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9SL76

Fln msg: Distance to subject end: 954 aas, atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 113 - 1094

Fln protein: MGCIHSKNAKRKENDRDEYVVTHIEDNSAEGEAEGGIGVDRVGSLDLDARVPRLSRLSAQFLPSSGSRVAQVPAFNFELKYSYLSQRGYYPESLDKANQDSFCIHMQFGNNIN

Protein Length: 114

Fln nts: AGTCGAGGGAGTAGGAAGTGAGTACAAGCTTCGATGGGCTGCCTACGGGATAGGAAGTGAGTACAAGCTTCA_-_ATGGGTTGCATACATTCAAAAAATGCTAAGCGGAAGGAAAATGACAGAGACGAGTATGTCGTCACTCACATTGAAGATAATTCTGCGGAGGGTGAAGCTGAAGGAGGTATTGGAGTAGATAGGGTAGGCTCCTTAGACTTGGATGCCAGAGTTCCCCGTCTCTCCAGATTGTCGGCCCAGTTTCTACCTTCAAGCGGATCAAGAGTTGCACAGGTTCCGGCCTTTAATTTTGAATTGAAGTACTCTTACCTTTCACAGAGGGGGTACTATCCCGAATCTCTCGACAAAGCAAACCAGGATAGCTTCTGCATACATATGCAGTTTGGGAATAACATAAACG

Fln Alignment:

biogeco2_mira_c10612___SLDLDARVPRLSRLSAQFLPSSGSRVAQVPAFNFELKYSYLSQRGYYPESLDKANQDSFCIHMQFGNN
Q9SL76__________________SRDQEWGITRLSRVSSQFLPPDGSRVVKVPSCNYELRCSFLSQRGYYPDALDKANQDSFAIHTPFGSN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain