SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13534

Length: 362 nt

UniGene Fasta

>biog2_v2.0_unigene13534
GATTGGATTCCGGTGACCTTGCATATTTATCTACGGAGGCACGGAAATGCTTTCGTGCAATCGGAGAGGAATTTGGAGTTCCTGAGTTTGGAAGATGAGAATTTCTGCTAGCAATGACATCAATGAAGATACACTTGATGCATTGAACAAACAGGGGCATGAGGTGGATGCATTTGGGATAGGTACCCATCTCGTTACATGCTTTGCTCAACCTGCCCTTGGTTGTGTTTTAAATTGGTAGAGATAAAAGGTCAGCCTCGCATGAAATTATCTGAAGACGTCGCAAAGGTTTCAATTCCTTGCAAAAAGGAGTGTTATAGACTGTATGGGAGAGAGGGCTATCCTTTGGTGGACATAATGAC

Ace file of the UniGene biog2_v2.0_unigene13534

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5930	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Nicotinate phosphoribosyltransferase, putative n=1 Tax=Ricinus communis RepID=B9SC93_RICCO	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	nicotinate phosphoribosyltransferase-like protein	-	-	84%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nicotinate phosphoribosyltransferase.	EC:2.4.2.11	-	0.0	84%

Source	KEGGs	Term	Type	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760		84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064		84%
Blast2go	Metabolic pathways	01100		84%
Blast2go	Nicotinate-nucleotide diphosphorylase (carboxylating).	EC:2.4.2.19	-	84%

Source	KEGGs	Term	Identity
Blast2go	Nicotinate and nicotinamide metabolism	00760	84%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	84%
Blast2go	Metabolic pathways	01100	84%

Source	GOs	Term	Type	Identity
Blast2go	nicotinate nucleotide salvage	GO:0019358	Biological Process	84%
Blast2go	NAD biosynthetic process	GO:0009435	Biological Process	84%
Blast2go	nicotinate phosphoribosyltransferase activity	GO:0004516	Molecular Function	84%
Blast2go	nicotinate-nucleotide diphosphorylase (carboxylating) activity	GO:0004514	Molecular Function	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	84%

Source	InterPros	Term	Type	Identity
Sma3	Nicotinate phosphoribosyltransferase putative	IPR006405	-	-
Sma3	Nicotinate phosphoribosyltransferase-related	IPR007229	-	-
Sma3	Nicotinate phosphoribosyltransferase-like	IPR015977	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLD0

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 95 and 92, and overlapping frame ERROR between 229 and 229, Distance to subject end: 107 aas, your sequence is shorter than subject: 120 - 556

Fln protein: LDSGDLAYLSTEARKCFRAIGEEFGVPEFxxxRISASNDINEDTLDALNKQGHEVDAFGIGTHLVTCFAQPALGxxxKLVEIKGQPRMKLSEDVAKVSIPCKKECYRLYGREGYPLVDIM

Protein Length: 121

Fln nts: GATTGGATTCCGGTGACCTTGCATATTTATCTACGGAGGCACGGAAATGCTTTCGTGCAATCGGAGAGGAATTTGGAGTTCCTGAGTTTxxxxxxxxxAGAATTTCTGCTAGCAATGACATCAATGAAGATACACTTGATGCATTGAACAAACAGGGGCATGAGGTGGATGCATTTGGGATAGGTACCCATCTCGTTACATGCTTTGCTCAACCTGCCCTTGGTTGxxxxxxTAAATTGGTAGAGATAAAAGGTCAGCCTCGCATGAAATTATCTGAAGACGTCGCAAAGGTTTCAATTCCTTGCAAAAAGGAGTGTTATAGACTGTATGGGAGAGAGGGCTATCCTTTGGTGGACATAATGAC

Fln Alignment:

biogeco2_mira_c10515___LDSGDLAYLSTEARKCFRAIGEEFGVPEFGxMRISASNDINEDTLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEIKGQPRMKLSEDVAKVSIPCKKECYRLYGREGYPLVDIM
B8LLD0__________________LDSGDLAYLSTQAREFFRGIEKEFGVPDFGxMPITASNDINEETLDALNKQGHEVDAFGIGTHLVTCFAQPALGCVFKLVEINGQPRMKLSEDVSKVSIPCKKRCYRLYGKDGYPLVDIM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain