SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13493

Length: 530 nt

UniGene Fasta

>biog2_v2.0_unigene13493
GAAATGCGTGAATACAGGGAAAGGATCAGATTTAATGGGGAACAGGTTGTTGATGGAGCAAATCTCCATCAAACTGGCATGCACTTGGGAAGAAATGACAATGTTACAAAGAACGATGTGTGCGATACAGCTTAGATTTAACTAGACTCTACGACCCCTGCTTAAGTGTGCAAGAGGTTCGGTTTGTCATTTCAGGGTACATATTTATGGTTCTGGTACAGGAAAGGTGGCTGTGCAATCTTCCAAAGAAATGAGAGTTGGGTTCCCCTCAGGGAGGCAAGGTGTGACCTGTCTAGAGGGCTAGTAACTTCATTGTTATTCAAGGGTGCATTTCTCTGTATTAAAGCTCCATTGTGTCTCCAGTGACTTGTTAATTGTTTAGACCTAATGGCCTGTGTTATCTAATTGGGTTTTAGAGCACAATTCTTGCAAAGACGTATCAAAATTTTGAAGAGAGAGGGTGGGTGACAAGGAACTATATATTTCTCATATTGCTAATTGCATGAGTCAGATAGATGTGTAAATATGTA

Ace file of the UniGene biog2_v2.0_unigene13493

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6006	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	high mobility group-box and ARID domain-binding domain-containing protein [Arabidopsis thaliana] sp\|Q9MAT6.1\|HMG15_ARATH RecName: Full=High mobility group B protein 15; AltName: Full=Nucleosome/chromatin assembly factor group D 15 gb\|AAF40449.1\|AC004809_7	-	-	8.0e-31	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	high mobility group b protein 15-like	-	-	0.0	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	65%

Source	InterPros	Term	Type	Identity
Sma3		IPR000135	-	-
Sma3		IPR000910	-	-
Sma3	ARID/BRIGHT DNA-binding domain	IPR001606	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB01

Fln msg: your sequence is shorter than subject: 45 - 113

Fln protein: EMREYRERIRFNGEQVVDGANLHQTGMHLGRNDNVTKNDVCDTA*

Protein Length: 46

Fln nts: GAAATGCGTGAATACAGGGAAAGGATCAGATTTAATGGGGAACAGGTTGTTGATGGAGCAAATCTCCATCAAACTGGCATGCACTTGGGAAGAAATGACAATGTTACAAAGAACGATGTGTGCGATACAGCTTAG___ATTTAACTAGACTCTACGACCCCTGCTTAAGTGTGCAAGAGGTTCGGTTTGTCATTTCAGGGTACATATTTATGGTTCTGGTACAGGAAAGGTGGCTGTGCAATCTTCCAAAGAAATGAGAGTTGGGTTCCCCTCAGGGAGGCAAGGTGTGACCTGTCTAGAGGGCTAGTAACTTCATTGTTATTCAAGGGTGCATTTCTCTGTATTAAAGCTCCATTGTGTCTCCAGTGACTTGTTAATTGTTTAGACCTAATGGCCTGTGTTATCTAATTGGGTTTTAGAGCACAATTCTTGCAAAGACGTATCAAAATTTTGAAGAGAGAGGGTGGGTGACAAGGAACTATATATTTCTCATATTGCTAATTGCATGAGTCAGATAGATGTGTAAATATGTA

Fln Alignment:

biogeco2_mira_c10465___EMREYRERIRFNGEQVVDGANLHQTGMHLGRNDNVTKNDVCDTA
D5AB01__________________EMREYRERIRFNGEQA-DGANLPQTCLQLGRNDNITKDDVCNTA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain