SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13385

Length: 433 nt

UniGene Fasta

>biog2_v2.0_unigene13385
TAATCGTTCCGATATCGATGTCACTAAATTAGAAAACCCATCGGAATCTGCGAGGCTCCGGAGAATCTATGATGCTGTGGATGAAAATGGTGACGAGAAGCTTACGATTCAGGAGATCAGTGGCTTCCTAAAGAAGCTCGGAATGCAAATGTCGGATCAAGATGTGGAATCCATCGTTGTCCCCTCTCCAGCAGCGAGGATGGAAGCCTCAAATTCGACCAATTCATTTCATTACACGAATCGCTGTGCCACAACATTGGATTAAGTGCTGAGGATGAGGAGGGGGCCAATCAGCTGATGATCTGATGGAAGCGTTCAGAGTATTTGATAAGAACAGAGATGGGTACATCTCTTCTGAGGAACTGCAACAGATTCTTCACAGTCTGGGATTGGGCGAGGGCAGAGACTTGGGTAACTGTGAAAAATGATCTAC

Ace file of the UniGene biog2_v2.0_unigene13385

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene28475	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium binding n=2 Tax=Vitis RepID=C5DB59_VITVI	-	-	3.0e-26	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%
Blast2go	calmodulin-like protein 5-like	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	trichome branching	GO:0010091	Biological Process	65%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	65%
Blast2go	protein binding	GO:0005515	Molecular Function	65%

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM84

Fln msg: Separated hits, possible frame ERROR between 262 and 282, Unexpected STOP codon at 3' end. Distance to subject end: 41 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 143 - 177

Fln protein: NRSDIDVTKLENPSESARLRRIYDAVDENGDEKLTIQEISGFLKKLGMQMSDQDVESIVVPSPAARMEASNSTNSFHYTNRCATTLxxxxxxxxGGQSADDLMEAFRVFDKNRDGYISSEELQQILHSLGLGEGRDLGNCEK*

Protein Length: 144

Fln nts: TAATCGTTCCGATATCGATGTCACTAAATTAGAAAACCCATCGGAATCTGCGAGGCTCCGGAGAATCTATGATGCTGTGGATGAAAATGGTGACGAGAAGCTTACGATTCAGGAGATCAGTGGCTTCCTAAAGAAGCTCGGAATGCAAATGTCGGATCAAGATGTGGAATCCATCGTTGTCCCCTCTCCAGCAGCGAGGATGGAAGCCTCAAATTCGACCAATTCATTTCATTACACGAATCGCTGTGCCACAACATTGGAxxxxxxxxxxxxxxxxxxxxxAGGGGGCCAATCAGCTGATGATCTGATGGAAGCGTTCAGAGTATTTGATAAGAACAGAGATGGGTACATCTCTTCTGAGGAACTGCAACAGATTCTTCACAGTCTGGGATTGGGCGAGGGCAGAGACTTGGGTAACTGTGAAAAATGATCTAC

Fln Alignment:

biogeco2_mira_c10332___LRRIYDAVDENGDEKLTIQEISGFLKKLGMQMSDQDVESIVVPSPAARMEASNSTNSFHYTNRCATTLDxxxxxxxGGQSADDLMEAFRVFDKNRDGYISSEELQQILHSLGLGEGRDLGNCEK
A9NM84__________________LRRLYETINENGDGRLTVNEMNRSLNRIGIDISEEDLKYLVIPMSQSE---DGSLTFDEFVGLCQSILDxxxxxxxGEEGCEDLMEAFKVYDMNNDGFISSTELQRVLCNLGFVEGEELDNCQK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain