SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13372

Length: 461 nt

UniGene Fasta

>biog2_v2.0_unigene13372
ATGGGGACCTTTCTCAGGACAAGGGCATCCTCAGGTCCAAGTGCTAGTGCGAGTCCGACTTTGCGATTTCTAACACCTTCAGTCAGGCCATCTACACCAACATCCAAGCCTTCCACACTGTCCATAAGGTTCCCAACTCCGACACTTAGAAGATCTAGCCCTGGATCTGGTGGTTCAGTGGCAAGGGGTGCATCTTCATCTGGAAAAGCAAACCGTGCTACGCCCTCCTCCCCAAAGCTACAGTCTTGGCATTAAAACATTCCTGGATTCACAGTAGAGCTCCCTCCAAAGCTTCTTACATCAATAAGTGATCGGCCCATATCTAGGACAAGAGGTTCAGTTCCTGCATCAAGGGTGGTGTCTCCTGCATCAAGGCCTGGAAGTGAGGCTGGAAATGATCGAGGCCACAATCTGTTTCACCAACAGTTTATAGAAGTGTGAGATCTTCGAACAACTGTGAT

Ace file of the UniGene biog2_v2.0_unigene13372

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10173	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	52%
Blast2go	uncharacterized protein	-	-	5.75005e-10	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	5.75005e-10	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	Somatotropin hormone, conserved site	IPR018116	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RMM4

Fln msg: Separated hits, possible frame ERROR between 336 and 408, Distance to subject end: 868 aas, your sequence is shorter than subject: 154 - 1178

Fln protein: MGTFLRTRASSGPSASASPTLRFLTPSVRPSTPTSKPSTLSIRFPTPTLRRSSPGSGGSVARGASSSGKANRATPSSPKLQSWH*NIPGFTVELPPKLLTSISDRPISRTRxxxxxxxxxxxxxxxxxxxxxxxxxQSVSPTVYRSVRSSNNCD

Protein Length: 155

Fln nts: ATGGGGACCTTTCTCAGGACAAGGGCATCCTCAGGTCCAAGTGCTAGTGCGAGTCCGACTTTGCGATTTCTAACACCTTCAGTCAGGCCATCTACACCAACATCCAAGCCTTCCACACTGTCCATAAGGTTCCCAACTCCGACACTTAGAAGATCTAGCCCTGGATCTGGTGGTTCAGTGGCAAGGGGTGCATCTTCATCTGGAAAAGCAAACCGTGCTACGCCCTCCTCCCCAAAGCTACAGTCTTGGCATTAAAACATTCCTGGATTCACAGTAGAGCTCCCTCCAAAGCTTCTTACATCAATAAGTGATCGGCCCATATCTAGGACAAGAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxACAATCTGTTTCACCAACAGTTTATAGAAGTGTGAGATCTTCGAACAACTGTGAT

Fln Alignment:

biogeco2_mira_c10317___NRATPSSPKLQSWH*NIPGFTVELPPKLLTSISDRPISRTRGxxxxxxxxxxxxxxxxxxxxxxxxQSVSPTVYRSVRSSNNCD
B9RMM4__________________SRGNSASPKIRAWQSNIPGFSSEAPPNLRTSLADRPASYVRGxxxxxxxxxxxxxxxxxxxxxxxxQSMSPTATRSVSSSQSQD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain