SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13274

Length: 242 nt

UniGene Fasta

>biog2_v2.0_unigene13274
TGGTCACATGAAGCTCTCAGATTTTGGCCTTTGCAAGCCTCTTGACTGTACAACATTATCAACTCTTCACGAAAATGAGCCTATAAATGATGAGAATTTAAGGGAGTCAATGGACATAGATGGTTGTTCTCCAGATTCTAAGATTGGGGGCCCATGGAAAAGTCAGCTTGAACAACTTCAGCATTGGCAGCGGAATAGGAGGATGCTGGCATATTCTACAGTTGGCACACCTGACTATATTG

Ace file of the UniGene biog2_v2.0_unigene13274

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2601	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	protein kinase [Spinacia oleracea]	-	-	72%
FL-Next	tr=Putative uncharacterized protein Sb03g003320; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	72%
Blast2go	serine threonine-protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein kinase C.	EC:2.7.11.13	-	0.0	88%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Phosphatidylinositol signaling system	04070		0.0	88%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	88%
Blast2go	protein kinase C activity	GO:0004697	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%

Source	InterPros	Term	Type	Identity
Sma3	AGC-kinase, C-terminal	IPR000961	-	-
Sma3	Protein kinase, C-terminal	IPR017892	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XM10

Fln msg: Distance to subject end: 214 aas, your sequence is shorter than subject: 80 - 549

Fln protein: GHMKLSDFGLCKPLDCTTLSTLHENEPINDENLRESMDIDGCSPDSKIGGPWKSQLEQLQHWQRNRRMLAYSTVGTPDYI

Protein Length: 81

Fln nts: TGGTCACATGAAGCTCTCAGATTTTGGCCTTTGCAAGCCTCTTGACTGTACAACATTATCAACTCTTCACGAAAATGAGCCTATAAATGATGAGAATTTAAGGGAGTCAATGGACATAGATGGTTGTTCTCCAGATTCTAAGATTGGGGGCCCATGGAAAAGTCAGCTTGAACAACTTCAGCATTGGCAGCGGAATAGGAGGATGCTGGCATATTCTACAGTTGGCACACCTGACTATATTG

Fln Alignment:

biogeco2_mira_c10195___GHMKLSDFGLCKPLDCTTLSTLHENEPINDENLRESMDIDGCSPDSKIGGPWKSQLEQLQHWQRNRRMLAYSTVGTPDYI
C5XM10__________________GHMKLSDFGLCKPIDCSKLSTLNEDEPMGDDNLRESMDIDSSLSDTANGRRWRSQHEQLQHWQMNRRKLAFSTVGTPDYI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain