SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13270

Length: 336 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13270
GCTGATTATCCTTTTCTTTAGAGATTGTGAAGCCCAGGGCAAATCAGATTATCATGCACTGATAGCTTTCAAGGCCTCCTCTGATATCAATAACACTCTGGCGTTCTCATGGACACATAAGAATCCATGCAGACGAAAGTGGTATGGAGTTGGGTGTGAGAATGGCCGGGTAGTGAGGCTTGTGCTCCAGGATCTCGACCTCGTGGGTCCGATTGATGCCTTAGCAGGTCTCCATGAGCTCAGAATTCTGAGCTTGAAGAGAAATTCACTCAATGGCACCATTCCTGATTTTTGAACTGGAGAAGTCTTAAGTTCCTGTTTCTCTCTGATAACTAT

Ace file of the UniGene biog2_v2.0_unigene13270 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21164	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative receptor kinase n=1 Tax=Malus x domestica RepID=Q2LJM2_MALDO	-	-	48%
FL-Next	sp=Probable leucine-rich repeat receptor-like protein kinase At1g68400; Arabidopsis thaliana (Mouse-ear cress).	-	-	39%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9M9C5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 545 aas, atg_distance in limit (1-15): atg_distance = 14, W2: There is no M at the beginning, your sequence is shorter than subject: 98 - 670

Fln protein: LIILFFRDCEAQGKSDYHALIAFKASSDINNTLAFSWTHKNPCRRKWYGVGCENGRVVRLVLQDLDLVGPIDALAGLHELRILSLKRNSLNGTIPDF*

Protein Length: 99

Fln nts: GCTGATTATCCTTTTCTTTAGAGATTGTGAAGCCCAGGGCAAATCAGATTATCATGCACTGATAGCTTTCAAGGCCTCCTCTGATATCAATAACACTCTGGCGTTCTCATGGACACATAAGAATCCATGCAGACGAAAGTGGTATGGAGTTGGGTGTGAGAATGGCCGGGTAGTGAGGCTTGTGCTCCAGGATCTCGACCTCGTGGGTCCGATTGATGCCTTAGCAGGTCTCCATGAGCTCAGAATTCTGAGCTTGAAGAGAAATTCACTCAATGGCACCATTCCTGATTTTTGAACTGGAGAAGTCTTAAGTTCCTGTTTCTCTCTGATAACTAT

Fln Alignment:

biogeco2_mira_c10191___IILFFRDC--EAQGKSDYHALIAFKASSDINNTLAFSWTHKNPCRRKWYGVGCENGXXXXXXXXXXXXVGPIDALAGLHELRILSLKRNSLNGTIPD
Q9M9C5__________________LLILLQSCLLSSSSSTDSETLLNFKLTADSTGKLNSWNTTTNPCQ--WTGVSCNRNRVTRLVLEDINLTGSISSLTSLTSLRVLSLKHNNLSGPIPN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain