SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13253

Length: 386 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13253
AGGTTCCCACGTCAAATAATCTATTTATTCATATCTCCAAAAAGTCTTGGACAATCATTCCAAGGTATTTGAGACTCTCAAACGCTTTCCACCTATTCATGATCATTATCATGCTATTCATTTGATTCCAAGAAGTGTTCCTCCAAACATCAGGCCTTACAGATATTCCTATGCCTAAAAGAGTGAAATTGAATGTATGGTTGCATAAATGCTAGACGCTGGTATAATTCAACCTAGTCAAAGTTTTTTCTCTGCTCCAGTAATATTGGTGCACAAGAAGGATGGATCATGGCGCATGTGTTCGGATTATAAGGAGCTCAACATGTTCACTATTAAAGATACATTTCTGATCCTTGTTAAAATGTTTACATTACATTAAATTAATC

Ace file of the UniGene biog2_v2.0_unigene13253 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene54752	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=1 Tax=Oryza sativa Japonica Group RepID=Q2R3G0_ORYSJ	-	-	4.0e-24	51%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	50%
Blast2go	retrotransposon unclassified	-	-	8.75273e-29	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	8.75273e-29	65%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Protein translocase complex, SecE/Sec61-gamma subunit	IPR001901	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Phospholipid/glycerol acyltransferase	IPR002123	-	-
Sma3	Lipase, class 3	IPR002921	-	-
Sma3	Intron-encoded nuclease 2	IPR003611	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5CAG1

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 1163 aas, your sequence is shorter than subject: 126 - 1448

Fln protein: GSHVK*SIYSYLQKVLDNHSKVFETLKRFPPIHDHYHAIHLIPRSVPPNIRPYRYSYA*KSEIECMVA*MLDAGIIQPSQSFFSAPVILVHKKDGSWRMCSDYKELNMFTIKDTFLILVKMFTLH*

Protein Length: 127

Fln nts: AGGTTCCCACGTCAAATAATCTATTTATTCATATCTCCAAAAAGTCTTGGACAATCATTCCAAGGTATTTGAGACTCTCAAACGCTTTCCACCTATTCATGATCATTATCATGCTATTCATTTGATTCCAAGAAGTGTTCCTCCAAACATCAGGCCTTACAGATATTCCTATGCCTAAAAGAGTGAAATTGAATGTATGGTTGCATAAATGCTAGACGCTGGTATAATTCAACCTAGTCAAAGTTTTTTCTCTGCTCCAGTAATATTGGTGCACAAGAAGGATGGATCATGGCGCATGTGTTCGGATTATAAGGAGCTCAACATGTTCACTATTAAAGATACATTTCTGATCCTTGTTAAAATGTTTACATTACATTAAATTAATC

Fln Alignment:

biogeco2_mira_c10170___LQKVLDNHSKVFETLKRFPPIHDHYHAIHLIPRSVPPNIRPYRYSYA*KSEIECMVA*MLDAGIIQPSQSFFSAPVILVHKKDGSWRMCSDYKELNMFTIKDTFLILVKM
A5CAG1__________________VKEVLAQHQQIFEPITXLPPSRDIDHAIQLIPGASPVNVRPYRYPHILKNEIERLVQEMLEAGIVRPSLSPFSSPVLLVKKKDGGWRFCIDYCALNKVTVXDRFPISIRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain