SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13222

Length: 267 nt

UniGene Fasta

>biog2_v2.0_unigene13222
ATGGGTGCTCTTCTGAAGGATGAAAAGGATGTGTATTTTACTTCTGGAAATACACAGAGGGATGGAATAAGAAAAGCAACTGAAGGCATGCGGTCTTCAAAGTTTTGCCTTAACATTGCAGGCGATACACCCTCTTCAAATCGGCTGTTTGATGCGATTGCTAGTCATTGCGTTCCTGTTATCATTAGTGATGAGATTGAGCTTCCTTATGAAGATGTCCTTGATTATACAGAATTCTGCATTTTTGTACAATCTGCTGATGCTGTC

Ace file of the UniGene biog2_v2.0_unigene13222

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8751	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exostosin domain containing protein	-	-	4.0e-36	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Blast2go	exostosin family protein	-	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	83%
Blast2go	endomembrane system	GO:0012505	Cellular Component	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	e value	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	0.0	-
Sma3	Exostosin-like	IPR004263	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NV69

Fln msg: Distance to subject end: 76 aas, your sequence is shorter than subject: 89 - 446

Fln protein: MGALLKDEKDVYFTSGNTQRDGIRKATEGMRSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDEIELPYEDVLDYTEFCIFVQSADAV

Protein Length: 90

Fln nts: ATGGGTGCTCTTCTGAAGGATGAAAAGGATGTGTATTTTACTTCTGGAAATACACAGAGGGATGGAATAAGAAAAGCAACTGAAGGCATGCGGTCTTCAAAGTTTTGCCTTAACATTGCAGGCGATACACCCTCTTCAAATCGGCTGTTTGATGCGATTGCTAGTCATTGCGTTCCTGTTATCATTAGTGATGAGATTGAGCTTCCTTATGAAGATGTCCTTGATTATACAGAATTCTGCATTTTTGTACAATCTGCTGATGCTGTC

Fln Alignment:

biogeco2_mira_c10134___MGALLKDEKDVYFTSGNTQRDGIRKATEGMRSSKFCLNIAGDTPSSNRLFDAIASHCVPVIISDEIELPYEDVLDYTEFCIFVQSADAV
A9NV69__________________LAKILGNHKRVHFEDSLATTEGFEVAKQGMRSSRFCLHPAGDTPSSCRLFDAIVSHCVPVIVSDRIELPFEDEIDYQEFSLFFSVKEAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain