SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13203

Length: 522 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13203
ACTATTATATTAGATGGCCTTCTTCTAGCTCTCTGTCAAGACCTTCTTCTCCAAATGCAGCAGCCGATGATTGGGGTTCTGAAGAACCTCAGACTTTAAGTCAACAGAGGCCTTTCACAGCCCAGCTGGCTGCATTTGATGCTGCCTGGTGCTCTTATTTATATCAATTTGTCTTGTGGAAAGTCAAGGATGCACAATCCCTTGAAGATGATTTAATTAGAGTGGCTTGCCAGCTAGAAGTTTCAATGCTGCAGAAGTGCAAGATAACATCAGGAGATGAGGATGATGCTAGTCATGACTCAAAGGCCATTCGCAAGCAGGTTCTCGAAGATCAACAACTTCTGCGAGAAAGGGTTCTTCATTTGAGTGGCAGTGATGGAACAACAAGGATGAAAATGGCACTATCAGATGCACGAGCTAAATTTATGGAATCAAAGGAGAATGGAACTCTACCGATGTCACCATTTTACCCTGCATCATTTTCGCCATCTCATAGTCCCTCTGATGTCCAAAATAGTGATA

Ace file of the UniGene biog2_v2.0_unigene13203 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene34776	2/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	T-complex protein 11 [Arabidopsis thaliana] gb\|AAB72161.1\| unknown [Arabidopsis thaliana] gb\|AAN41345.1\| unknown protein [Arabidopsis thaliana] gb\|AEE30311.1\| T-complex protein 11 [Arabidopsis thaliana]	-	-	1.0e-29	47%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	57%
Blast2go	t-complex protein 11	-	-	6.44376e-40	71%

Source	InterPros	Term	Type	e value	Identity
Sma3	K Homology domain	IPR004087	-	0.0	-
Sma3	T-complex 11	IPR008862	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SRP8

Fln msg: Distance to subject end: 546 aas, your sequence is shorter than subject: 173 - 1169

Fln protein: YYIRWPSSSSLSRPSSPNAAADDWGSEEPQTLSQQRPFTAQLAAFDAAWCSYLYQFVLWKVKDAQSLEDDLIRVACQLEVSMLQKCKITSGDEDDASHDSKAIRKQVLEDQQLLRERVLHLSGSDGTTRMKMALSDARAKFMESKENGTLPMSPFYPASFSPSHSPSDVQNSD

Protein Length: 174

Fln nts: ACTATTATATTAGATGGCCTTCTTCTAGCTCTCTGTCAAGACCTTCTTCTCCAAATGCAGCAGCCGATGATTGGGGTTCTGAAGAACCTCAGACTTTAAGTCAACAGAGGCCTTTCACAGCCCAGCTGGCTGCATTTGATGCTGCCTGGTGCTCTTATTTATATCAATTTGTCTTGTGGAAAGTCAAGGATGCACAATCCCTTGAAGATGATTTAATTAGAGTGGCTTGCCAGCTAGAAGTTTCAATGCTGCAGAAGTGCAAGATAACATCAGGAGATGAGGATGATGCTAGTCATGACTCAAAGGCCATTCGCAAGCAGGTTCTCGAAGATCAACAACTTCTGCGAGAAAGGGTTCTTCATTTGAGTGGCAGTGATGGAACAACAAGGATGAAAATGGCACTATCAGATGCACGAGCTAAATTTATGGAATCAAAGGAGAATGGAACTCTACCGATGTCACCATTTTACCCTGCATCATTTTCGCCATCTCATAGTCCCTCTGATGTCCAAAATAGTGATA

Fln Alignment:

biogeco2_mira_c10113___DWGSEEPQT--LSQQRPFTAQLAAFDAAWCSYLYQFVLWKVKDAQSLEDDLIRVACQLEVSMLQKCKI-TSGDEDDASHDSKAIRKQVLEDQQLLRERVLHLSGSDGTTRMKMALSDARAKFMESKENGTLPMSPFYP--ASFSPSHSPSDVQNS
A9SRP8__________________DWPADMSPTTVLPSPRPFAAQLAAFDAAWCAYLYQFVAWKVKDAKALEEDMTRMACQLEVSMLHKCKIPQGGSASDLSHDAQAIRTQVLEDQKLLRDRISHLTGSAGLVRMEEALLDVRTRYAEAPESGSPPPSPFSTPIRSKSSPTSPGSVVSS

SNPs (tot: 3)

Position	A %	C %	T %	Probability
247		66	33	0.997452
265	66	33		0.997464
267	33		66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain