SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13189

Length: 204 nt

UniGene Fasta

>biog2_v2.0_unigene13189
GATGTATGTGTTGATTCTTGTGTGCAAATCATTACAGGTAATGCACCTGTTTGCAAGGTTGTTGGCATGATTGTGGAAGCTAATATCCAGAAGTGTTTTGGACACCTTGCATTGTCCATTCTTTGAATTTAGCACTTAAATCTATTGCTTCTGATGTGCTTTGGATTGGTAGCATTATTGAGGGTGCACTGCATATCCGCCCAT

Ace file of the UniGene biog2_v2.0_unigene13189

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene43993	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ	-	-	4.0e-08	47%
FL-Next	tr=Putative uncharacterized protein Sb08g015460; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	51%
Blast2go	hat dimerisation domain-containing	-	-	8.35832e-10	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YNV9

Fln msg: Overlapping hits, possible frame ERROR between 99 and 84, Distance to subject end: 402 aas, your sequence is shorter than subject: 68 - 698

Fln protein: DVCVDSCVQIITGNAPVCKVVGMIVEAxxxxxxxTPCIVHSLNLALKSIASDVLWIGSIIEGALHIRP

Protein Length: 69

Fln nts: GATGTATGTGTTGATTCTTGTGTGCAAATCATTACAGGTAATGCACCTGTTTGCAAGGTTGTTGGCATGATTGTGGAAGCTxxxxxxxxxxxxxxxxxxxxxACACCTTGCATTGTCCATTCTTTGAATTTAGCACTTAAATCTATTGCTTCTGATGTGCTTTGGATTGGTAGCATTATTGAGGGTGCACTGCATATCCGCCCAT

Fln Alignment:

biogeco2_mira_c10097___DSCVQIITGNAPVCKVVGMIVEANxxxxxWTPCIVHSLNLALKSIASDVLW
C5YNV9__________________DNVVQIITDNAANCKGAGLIIEAExxxxxWTPCVVHTLNLALKSICDKFVW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain