SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13188

Length: 386 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13188
ATATAGTCGAGAGCAGAATTTTCTGCCTTATGTCCTGGACATGACATCTGCAACACTCCTGTTTTAAAACATACGAAGGAAGCGATATGACAGCTGCAGCAGGATTAGGGTACGCCTTAATAGCGCTTGGCCCTGCGCTATCCCTTTTCATCACAGTCATTGCAAGAAAGCCCTTCCTCGTCCTCACTGTTCTTACCAGTGCACTTTTATGGCTCATAAGCCTCATAGTACTAGCAGGCATTTGGAGAGCCTTTCTTCCTCTTGGTTCTTCTGTTTGGCCCTATGCATTGCTCTTAATTACGTCTGTTGGTTTTCAAGAAGGACTTAGGCTTATGTTTTGGAAGCTTTACAAGAAGGTAGAAGCAATTTTGAATGCTCTAGCACAG

Ace file of the UniGene biog2_v2.0_unigene13188 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18562	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	gamma-secretase subunit APH1-like protein [Arabidopsis thaliana] sp\|Q8L9G7.2\|APH1_ARATH RecName: Full=Gamma-secretase subunit APH1-like gb\|AAL36063.1\| At2g31440/T28P16.7 [Arabidopsis thaliana] gb\|AAD26475.2\| unknown protein [Arabidopsis thaliana] gb\|AAM19	-	-	61%
FL-Next	sp=Gamma-secretase subunit APH1-like; Arabidopsis thaliana (Mouse-ear cress).	-	-	67%
Blast2go	gamma-secretase subunit aph-1b	-	-	81%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Aph-1	IPR009294	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q8L9G7

Fln msg: Distance to subject end: 149 aas, your sequence is shorter than subject: 100 - 250

Fln protein: MTAAAGLGYALIALGPALSLFITVIARKPFLVLTVLTSALLWLISLIVLAGIWRAFLPLGSSVWPYALLLITSVGFQEGLRLMFWKLYKKVEAILNALAQ

Protein Length: 101

Fln nts: ATATAGTCGAGAGCAGAATTTTCTGCCTTATGTCCTGGACATGACATCTGCAACACTCCTGTTTTAAAACATACGAAGGAAGCGAT_-_ATGACAGCTGCAGCAGGATTAGGGTACGCCTTAATAGCGCTTGGCCCTGCGCTATCCCTTTTCATCACAGTCATTGCAAGAAAGCCCTTCCTCGTCCTCACTGTTCTTACCAGTGCACTTTTATGGCTCATAAGCCTCATAGTACTAGCAGGCATTTGGAGAGCCTTTCTTCCTCTTGGTTCTTCTGTTTGGCCCTATGCATTGCTCTTAATTACGTCTGTTGGTTTTCAAGAAGGACTTAGGCTTATGTTTTGGAAGCTTTACAAGAAGGTAGAAGCAATTTTGAATGCTCTAGCACAG

Fln Alignment:

biogeco2_mira_c10096___SLFITVIARKPFLVLTVLTSALLWLISLIVLAGIWRAFLPLGSSV-WPYALLLITSVGFQEGLRLMFWKLYKKVEAILNALA
Q8L9G7__________________SLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLKANVWWPYALLVITSVCFQEGLRFLFWKVYKRLEDVLDSFA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain