SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13183

Length: 421 nt

UniGene Fasta

>biog2_v2.0_unigene13183
TCAAAACATTGAAGAGGAACTAGTGAGCATGCTTCAGATTGCTTTGCTCTGTGCCTCACAATCTCCTCAGCAACGCCCTAAAATGAGCCATGTGGTGAGGATGATTCAAGACATTAGAGGAGATCACCACTCTCCCTCCATGCAGAATTCTCTATCTCAATCTCCTTCCATGCAAGAACCAGGTCATTCATATCAGACTCTCCTTCTGTATCAGAGGACTCGGGAATAAGAGGCCTGTGAGTTTGTGTATTTGTTCTCATTAGAATCCAATTTGCTTGAATTTAATTGCAGGTATTCTTTAGCAGCATCCTTTTGGATGGGCATTTAACTAGCTGTAGCATAAGAGTGTAGCATATGCTTAAATGGGCATTTAAGTATATGCAGTGTGTAGGAGGAGGTATATTTTAGAAGACTTGGATTT

Ace file of the UniGene biog2_v2.0_unigene13183

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21164	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Putative receptor kinase n=1 Tax=Malus x domestica RepID=Q2LJM2_MALDO	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	58%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Formate C-acetyltransferase glycine radical, conserved site	IPR019777	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN40

Fln msg: your sequence is shorter than subject: 76 - 340

Fln protein: QNIEEELVSMLQIALLCASQSPQQRPKMSHVVRMIQDIRGDHHSPSMQNSLSQSPSMQEPGHSYQTLLLYQRTRE*

Protein Length: 77

Fln nts: TCAAAACATTGAAGAGGAACTAGTGAGCATGCTTCAGATTGCTTTGCTCTGTGCCTCACAATCTCCTCAGCAACGCCCTAAAATGAGCCATGTGGTGAGGATGATTCAAGACATTAGAGGAGATCACCACTCTCCCTCCATGCAGAATTCTCTATCTCAATCTCCTTCCATGCAAGAACCAGGTCATTCATATCAGACTCTCCTTCTGTATCAGAGGACTCGGGAATAA___GAGGCCTGTGAGTTTGTGTATTTGTTCTCATTAGAATCCAATTTGCTTGAATTTAATTGCAGGTATTCTTTAGCAGCATCCTTTTGGATGGGCATTTAACTAGCTGTAGCATAAGAGTGTAGCATATGCTTAAATGGGCATTTAAGTATATGCAGTGTGTAGGAGGAGGTATATTTTAGAAGACTTGGATTT

Fln Alignment:

biogeco2_mira_c10090___QNIEEELVSMLQIALLCASQSPQQRPKMSHVVRMIQDIR
B8LN40__________________QNIEEEMVQLLQIAMACVAAVPDQRPRMQDVVKMIEDMR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain