SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13144

Length: 225 nt

UniGene Fasta

>biog2_v2.0_unigene13144
ATGGGTGGGGAAGTCAAAGTAAGCTGAAGACAGTGAAGCTGTAAGCATGCAGAGAATCGGGTCATTGATCAGTTCTATTTTCGGTAGCAGTGAAGCTCAGAAACCTGCAGCTAAAGTCAAAGCAATTTACATATATCCTATCAAGGCTTGCCGAGGCATTTCCGTGCCTCGGGCCTGCATTTCCCCATGGGTTCAGATGGGACAGCAATGGCTAGTTGTAAATTC

Ace file of the UniGene biog2_v2.0_unigene13144

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1471	1/2

Source	Descriptions	Term	Type	Identity
AutoFact	molybdenum cofactor sulfurase-like protein 1 [Oryza sativa Japonica Group]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	71%
Blast2go	molybdenum cofactor sulfurase family protein	-	-	76%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	76%
Blast2go	pyridoxal phosphate binding	GO:0030170	Molecular Function	76%
Blast2go	Mo-molybdopterin cofactor sulfurase activity	GO:0008265	Molecular Function	76%
Blast2go	molybdenum ion binding	GO:0030151	Molecular Function	76%

Source	InterPros	Term	Type	e value	Identity
Sma3	Molybdenum cofactor sulfurase, C-terminal	IPR005302	-	0.0	-
Sma3	MOSC, N-terminal beta barrel	IPR005303	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NM27

Fln msg: Distance to subject end: 263 aas, your sequence is shorter than subject: 59 - 324

Fln protein: MQRIGSLISSIFGSSEAQKPAAKVKAIYIYPIKACRGISVPRACISPWVQMGQQWLVVN

Protein Length: 60

Fln nts: ATGGGTGGGGAAGTCAAAGTAAGCTGAAGACAGTGAAGCTGTAAGC_-_ATGCAGAGAATCGGGTCATTGATCAGTTCTATTTTCGGTAGCAGTGAAGCTCAGAAACCTGCAGCTAAAGTCAAAGCAATTTACATATATCCTATCAAGGCTTGCCGAGGCATTTCCGTGCCTCGGGCCTGCATTTCCCCATGGGTTCAGATGGGACAGCAATGGCTAGTTGTAAATTC

Fln Alignment:

biogeco2_mira_c10044___EAQKPAAKVKAIYIYPIKACRGISVPRACISP-WVQMGQQWLVVN
A9NM27__________________EAEKPAAKVKAIYIYPIKACRGISLPQVCVCPTGFRWDRQWLVVN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain