SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13141

Length: 296 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13141
AAGGCACTCGAACATACTGGTTTTTCCCTTTATGTATATCTACTCTACAATTTTCCATCCTCGCCATAACCTATTTATTGACTGCATAGAACAAAAGTTTAGTAGCTGTGAAGATTGGTGTAACCAGAGACAAAATCTTGTGCTGGAGACCATGGGAGATCAGAATAAATCAAGCCGACTCATATTGGTGGCCATAGACGAGAGCGAGGAGAGCATCAACGCTCTCCAATGGGCACTTAACAACGTGTTTAAATCGCAGGATAGAATCACTCTAATTCATGCTCAGCGCTCCCCGA

Ace file of the UniGene biog2_v2.0_unigene13141 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene78571	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative universal stress protein [Mirabilis jalapa]	-	-	2.0e-20	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	universal stress protein	-	-	0.0	64%

Source	InterPros	Term	Type	Identity
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPQ2

Fln msg: Distance to subject end: 113 aas, your sequence is shorter than subject: 88 - 164

Fln protein: MYIYSTIFHPRHNLFIDCIEQKFSSCEDWCNQRQNLVLETMGDQNKSSRLILVAIDESEESINALQWALNNVFKSQDRITLIHAQRSP

Protein Length: 89

Fln nts: AAGGCACTCGAACATACTGGTTTTTCCCTTT_-_ATGTATATCTACTCTACAATTTTCCATCCTCGCCATAACCTATTTATTGACTGCATAGAACAAAAGTTTAGTAGCTGTGAAGATTGGTGTAACCAGAGACAAAATCTTGTGCTGGAGACCATGGGAGATCAGAATAAATCAAGCCGACTCATATTGGTGGCCATAGACGAGAGCGAGGAGAGCATCAACGCTCTCCAATGGGCACTTAACAACGTGTTTAAATCGCAGGATAGAATCACTCTAATTCATGCTCAGCGCTCCCCGA

Fln Alignment:

biogeco2_mira_c10041___LETMGDQNKSSRLILVAIDESEESINALQWALNNVFKSQDRITLIHAQRSP
B8LPQ2__________________MESVEEQKKSSRGILVAIDDTQESLNALQWVLNNLFTSQDRIILIHAQRNP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain