SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13140

Length: 399 nt

UniGene Fasta

>biog2_v2.0_unigene13140
ATGGGGAACAAGCTGCAAACGCCGTTAGAGTTCGGTTACAGATAAGCCCTAATGGGAGAGGGAGGAGTTGTCAGTGATGCAAGGTGCAGGATAGCTAGGGATGCAGCAAGGCTTGTGGCCGCTCCTTTTCTGGTGAAGACATATCGTTTAGTCGATGATCCCTNAACAGACCACATCATTTCCTGGGGAGACAATAACAACACCTTTGTTGTATGGTGCCCAAAAGAGTTTTCTGCTTCCGTGCTGCCAAGTTATTTCAACCACACCAATTTCTCAAGCTTTGTTAGGCAGCTGAATACTTATGGATTTCGAAAAATAGTTCGGGGCGTTGCGAGTTTGCGAACGAGTTATTCAGGAAGGCCAGAAGCATCTGCTCCCTCATATCCAGAGAAGAAAATC

Ace file of the UniGene biog2_v2.0_unigene13140

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene29597	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HSF domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ32_MALDO	-	-	6.0e-26	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	heat stress transcription factor b-4	-	-	3.89904e-32	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	asymmetric cell division	GO:0008356	Biological Process	3.89904e-32	85%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock factor (HSF)-type, DNA-binding	IPR000232	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUX6

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 332 aas, your sequence is shorter than subject: 133 - 489

Fln protein: MGNKLQTPLEFGYR*ALMGEGGVVSDARCRIARDAARLVAAPFLVKTYRLVDDP*TDHIISWGDNNNTFVVWCPKEFSASVLPSYFNHTNFSSFVRQLNTYGFRKIVRGVASLRTSYSGRPEASAPSYPEKKI

Protein Length: 134

Fln nts: ATGGGGAACAAGCTGCAAACGCCGTTAGAGTTCGGTTACAGATAAGCCCTAATGGGAGAGGGAGGAGTTGTCAGTGATGCAAGGTGCAGGATAGCTAGGGATGCAGCAAGGCTTGTGGCCGCTCCTTTTCTGGTGAAGACATATCGTTTAGTCGATGATCCCTaAACAGACCACATCATTTCCTGGGGAGACAATAACAACACCTTTGTTGTATGGTGCCCAAAAGAGTTTTCTGCTTCCGTGCTGCCAAGTTATTTCAACCACACCAATTTCTCAAGCTTTGTTAGGCAGCTGAATACTTATGGATTTCGAAAAATAGTTCGGGGCGTTGCGAGTTTGCGAACGAGTTATTCAGGAAGGCCAGAAGCATCTGCTCCCTCATATCCAGAGAAGAAAATC

Fln Alignment:

biogeco2_mira_c10040___PFLVKTYRLVDDP*TDHIISWGDNNNTFVVWCPKEFSASVLPSYFNHTNFSSFVRQLNTYGFRKI
A9NUX6__________________PFLTKTYDMVEDPLTDTVVSWSSTNNSFVVWNSHLFSSDLLPKYFKHNNFSSFVRQLNTYGFRKV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain