SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13122

Length: 468 nt

UniGene Fasta

>biog2_v2.0_unigene13122
ATGGGGTGGACCATCTGGTGTTGGTAAGGGAACCTTGATATCTAAACTCATGAAAGATTTTCCGTCTACTTTTGGGTTCTCTGTAAGTCATACAACGCGGCTTCCAAGAGAGAAAGAGGTGGCTGGAGTACATTATCACTTTACCCAACGTGGGGTTATGGAAATGGAAGTCCTGGAAGGAAATTTCTTGAATCTGCACATGTCCATGGCAATTTGTATGGAACAAGTATTGCAGCCGTGGAGGCAGTGGCTGATGCAGGGAAGAGATGCATTTTGGATGTAGATGTTCAGGGGGCTAGGGCTGTGAAGGACAGTACATTAGATGCTCTTTTCATCTTTATCTGTCCACCATCATTTGAAGATCTTGAGAAACGTTTGCGTGGAAGGGGAACAGAAGAAGAGGATCAGATCCAAAAGCGTCTGAGAAATGCAAAGGAAGAGCTTGAGCTTGGGAGAAACTCGATGTTA

Ace file of the UniGene biog2_v2.0_unigene13122

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene489	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	guanylate kinase [Lilium longiflorum]	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	39%
Blast2go	guanylate kinase	-	-	70%

Source	ECs	Term	Type	e value	Identity
Blast2go	Guanylate kinase.	EC:2.7.4.8	-	0.0	70%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	70%
Blast2go	Metabolic pathways	01100		0.0	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide metabolic process	GO:0009117	Biological Process	0.0	70%
Blast2go	guanylate kinase activity	GO:0004385	Molecular Function	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Adenylate kinase	IPR000850	-	-
Sma3	Peptidase C2, calpain, catalytic domain	IPR001300	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Guanylate kinase	IPR008144	-	-
Sma3	Guanylate kinase/L-type calcium channel	IPR008145	-	-
Sma3	Guanylate kinase, sub-group	IPR017665	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA64

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 35 aas, your sequence is shorter than subject: 94 - 277

Fln protein: WGGPSGVGKGTLISKLMKDFPSTFGFSVSHTTRLPREKEVAGVHYHFTQRGVMEMEVLEGNFLNLHMSMAICMEQVLQPWRQWLMQGRDAFWM*

Protein Length: 95

Fln nts: ATGGGGTGGACCATCTGGTGTTGGTAAGGGAACCTTGATATCTAAACTCATGAAAGATTTTCCGTCTACTTTTGGGTTCTCTGTAAGTCATACAACGCGGCTTCCAAGAGAGAAAGAGGTGGCTGGAGTACATTATCACTTTACCCAACGTGGGGTTATGGAAATGGAAGTCCTGGAAGGAAATTTCTTGAATCTGCACATGTCCATGGCAATTTGTATGGAACAAGTATTGCAGCCGTGGAGGCAGTGGCTGATGCAGGGAAGAGATGCATTTTGGATGTAGATGTTCAGGGGGCTAGGGCTGTGAAGGACAGTACATTAGATGCTCTTTTCATCTTTATCTGTCCACCATCATTTGAAGATCTTGAGAAACGTTTGCGTGGAAGGGGAACAGAAGAAGAGGATCAGATCCAAAAGCGTCTGAGAAATGCAAAGGAAGAGCTTGAGCTTGGGAGAAACTCGATGTTA

Fln Alignment:

biogeco2_mira_c10017___GPSGVGKGTLISKLMKDFPSTFGFSVSHTTRLPREKEVAGVHYHFTQR
D5AA64__________________GPSGVGKDAVVKRL-QEVRKGIHFVVTATTRAKRLGEVDGKDYFFVSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain