SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13118

Length: 538 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13118
CCTCGTGCAGGTTCCTGGCTCATGGTTGATTCAATATCTAGTCCACGGGCTTATGGGGCCGCGGCAGTTCTTGGAGATTCTGTCTATATGATTGGTGGCCTTGGAGAAATCGATTATGTCGACTCTGTTGAAACTTATCAGGATGGTGTTGGTTGGAAAGTCAGTTCACAAGCTATTGGCAAACGATCATTCCTAACTGCAGTTGTTTTATAGTTCTATATAGATATGGCAGGATACACTCTCTTTTTCAAGACATGACAAGTAAATCAGTTAATTCAAGATTAGATGGGTGTGCCATTGGAATTTCAGCATTATACTGTACCTTTCTATTGCTGTGTACGAGCTCTTCATTGAATCTGCGAGAATTTTTTTGTCTGAACCTGGGAGCTCATCCTGGTTTTGCAGTCACTACCGGAGGTGGAAGGCTTATGAGTAATACAGTCTAATTTAATGGACGACTATTAGATTTGTTCATTAAATATCACTTTGCGATGATTGTTGTCACAGGCGACAGTCAGAATTTGTGTAATGTGTATGG

Ace file of the UniGene biog2_v2.0_unigene13118 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene837	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kelch-like protein [Oryza sativa Japonica Group]	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	50%
Blast2go	uncharacterized protein	-	-	61%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Kelch repeat type 1	IPR006652	-	-
Sma3		IPR013089	-	-
Sma3	Development/cell death domain	IPR013989	-	-
Sma3	Kelch-type beta propeller	IPR015915	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HC99

Fln msg: your sequence is shorter than subject: 71 - 825

Fln protein: PRAGSWLMVDSISSPRAYGAAAVLGDSVYMIGGLGEIDYVDSVETYQDGVGWKVSSQAIGKRSFLTAVVL*

Protein Length: 72

Fln nts: CCTCGTGCAGGTTCCTGGCTCATGGTTGATTCAATATCTAGTCCACGGGCTTATGGGGCCGCGGCAGTTCTTGGAGATTCTGTCTATATGATTGGTGGCCTTGGAGAAATCGATTATGTCGACTCTGTTGAAACTTATCAGGATGGTGTTGGTTGGAAAGTCAGTTCACAAGCTATTGGCAAACGATCATTCCTAACTGCAGTTGTTTTATAG___TTCTATATAGATATGGCAGGATACACTCTCTTTTTCAAGACATGACAAGTAAATCAGTTAATTCAAGATTAGATGGGTGTGCCATTGGAATTTCAGCATTATACTGTACCTTTCTATTGCTGTGTACGAGCTCTTCATTGAATCTGCGAGAATTTTTTTGTCTGAACCTGGGAGCTCATCCTGGTTTTGCAGTCACTACCGGAGGTGGAAGGCTTATGAGTAATACAGTCTAATTTAATGGACGACTATTAGATTTGTTCATTAAATATCACTTTGCGATGATTGTTGTCACAGGCGACAGTCAGAATTTGTGTAATGTGTATGG

Fln Alignment:

biogeco2_mira_c10013___PRAGSWLMVDSISSPRAYGAAAVLGDSVYMIGGLGEIDYV-DSVETYQDGVGWKVSS-QAIGKRSFLTAVVL
F6HC99__________________PRIGSWMTGESMNDPRGYSGAVVLGESIYVIGGLKDNEEILDTVECYKEGHGWLVTSLKAVGKRCFFSATVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain