SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13105

Length: 217 nt

UniGene Fasta

>biog2_v2.0_unigene13105
TCCTATGGATTTAATCTTTTCTTTCGCTCCTGCCCTCGCTCTCAAATCTGCTGTGCTCCTCAAAATTCCAGATATCATCGCAACTGCAGGCCCTGATCCCGATTCCTCTCTCTCGCTTCGCCAAATAGCTGCGCGCCTCCCTACTCAAACTCCCCATCTCGATTATCTTTCCCGCATTCTCAGATACCTCTCCACCCTCGGCATTTCATTGAATCTC

Ace file of the UniGene biog2_v2.0_unigene13105

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2419	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	O-methyltransferase n=3 Tax=Pinus RepID=O24287_PINRA	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	caffeic acid o-methyltransferase	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	O-methyltransferase activity	GO:0008171	Molecular Function	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	-
Sma3	O-methyltransferase, family 2	IPR001077	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Plant methyltransferase dimerisation	IPR012967	-	-
Sma3	O-methyltransferase, COMT, eukaryota	IPR016461	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQK0

Fln msg: Distance to subject end: 275 aas, your sequence is shorter than subject: 72 - 395

Fln protein: PMDLIFSFAPALALKSAVLLKIPDIIATAGPDPDSSLSLRQIAARLPTQTPHLDYLSRILRYLSTLGISLNL

Protein Length: 73

Fln nts: TCCTATGGATTTAATCTTTTCTTTCGCTCCTGCCCTCGCTCTCAAATCTGCTGTGCTCCTCAAAATTCCAGATATCATCGCAACTGCAGGCCCTGATCCCGATTCCTCTCTCTCGCTTCGCCAAATAGCTGCGCGCCTCCCTACTCAAACTCCCCATCTCGATTATCTTTCCCGCATTCTCAGATACCTCTCCACCCTCGGCATTTCATTGAATCTC

Fln Alignment:

biogeco2_mira_c9998___DLIFSFAPALALKSAVLLKIPDIIATAGPDPDSSLSLRQIAARLPTQT---PHLDYLSRILRYLSTLGI
B8LQK0__________________DLIFSLYKPMALKAAVLLNIPDIIATHG--GDRSLSVEEIASYIAASTKKPPHLQYLFRLLRCLASYHI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain