SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13092

Length: 337 nt

UniGene Fasta

>biog2_v2.0_unigene13092
AGATTGCTTGTAGGAACCAGTGAAGCTATACCTCCGTCAGAAATTGTTGACACTACCGGAGCAGGGGATGGATTTATTGGTGCCGTCTTATATGCTCTTATTGCCAGAATGACCCCGGAAAAGATGCTTCCTTTCGCAGCCAAAGTGGCTGCAGCAGGATGCAGAGCCCTTGGTGCTAGGACTGGTTTGCCATATCGCAGTGATTCACAGTTGGGCACGTACTTGTGACGAAGTTTTGATTTCTTGGTGAACCCGATTTGTTTGTGTTGGAAAGAGTACTTGATTCTATTCTTGTCACAATTTTGTGTATCATATAGTTGTGTCAAATTTGGATCAT

Ace file of the UniGene biog2_v2.0_unigene13092

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10383	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9T5V5_RICCO	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	pfkb-like carbohydrate kinase family protein	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ribokinase.	EC:2.7.1.15	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose phosphate pathway	00030		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	D-ribose metabolic process	GO:0006014	Biological Process	77%
Blast2go	phosphorylation	GO:0016310	Biological Process	77%
Blast2go	ribokinase activity	GO:0004747	Molecular Function	77%
Blast2go	protein binding	GO:0005515	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbohydrate/purine kinase	IPR011611	-	0.0	-
Sma3	Ribokinase	IPR002139	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTY9

Fln msg: your sequence is shorter than subject: 76 - 429

Fln protein: RLLVGTSEAIPPSEIVDTTGAGDGFIGAVLYALIARMTPEKMLPFAAKVAAAGCRALGARTGLPYRSDSQLGTYL*

Protein Length: 77

Fln nts: AGATTGCTTGTAGGAACCAGTGAAGCTATACCTCCGTCAGAAATTGTTGACACTACCGGAGCAGGGGATGGATTTATTGGTGCCGTCTTATATGCTCTTATTGCCAGAATGACCCCGGAAAAGATGCTTCCTTTCGCAGCCAAAGTGGCTGCAGCAGGATGCAGAGCCCTTGGTGCTAGGACTGGTTTGCCATATCGCAGTGATTCACAGTTGGGCACGTACTTGTGA___CGAAGTTTTGATTTCTTGGTGAACCCGATTTGTTTGTGTTGGAAAGAGTACTTGATTCTATTCTTGTCACAATTTTGTGTATCATATAGTTGTGTCAAATTTGGATCAT

Fln Alignment:

biogeco2_mira_c9980___RLLVGTSEAIPPSEIVDTTGAGDGFIGAVLYALIARMTPEKMLPFAAKVAAAGCRALGARTGLPYRSDSQLGTYL
A9NTY9__________________RLLVGTAEAIPPSELVDTTGAGDGFIGSVLYALIASMPPERMLPFAAKVAAAGCRALGARTGLPYRSDSQLVTYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain