SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13051

Length: 460 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13051
ATGGGGGATCGAGTGAAATGCTGGGAGGAGCCATGACTTCCATCTGCAAACATTCATCGGCGGTCATCCGTGATAGCTCAAAATTTCATACCTCATTTCAATCAAAGCCAAGTCCCCGTCTCCTCCCAAGTCAATTAAGGCGCTCTCTGGCTTTTGTGGAACGTCTAAATGGCGACCTTTTGCGCATGCGCCATAACAGTAAGACCCACGCAGTTCGGTTTTTCTGTGCTTCTCGAGCCGATGACAAAATCAAGGTGGAAAATCCCGTCGTAGAAATGGATGGTGATGAAATGACGAGGGTTATATGGCACATGATCAAGGACAAGCTGATATTTCCACATTTGGAGTTGGATTTAAAGTACTTTGACCTTGGACTTCCAAACCGAGATGCAACTAATGATAGAGTTACCGTTGAGAGTGCTGAAGCCACACTAAAGTATAATGTTGCAGTAAAGTGTGC

Ace file of the UniGene biog2_v2.0_unigene13051 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene36351	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate dehydrogenase [NADP] n=1 Tax=Picea sitchensis RepID=A9NW62_PICSI	-	-	80%
FL-Next	sp=Isocitrate dehydrogenase [NADP]; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	isocitrate dehydrogenase	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	92%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Isocitrate/isopropylmalate dehydrogenase	IPR001804	-	0.0	-
Sma3	Isocitrate dehydrogenase NADP-dependent, eukaryotic-type	IPR004790	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NW62

Fln msg: Distance to subject end: 342 aas, your sequence is shorter than subject: 147 - 490

Fln protein: MLGGAMTSICKHSSAVIRDSSKFHTSFQSKPSPRLLPSQLRRSLAFVERLNGDLLRMRHNSKTHAVRFFCASRADDKIKVENPVVEMDGDEMTRVIWHMIKDKLIFPHLELDLKYFDLGLPNRDATNDRVTVESAEATLKYNVAVKC

Protein Length: 148

Fln nts: ATGGGGGATCGAGTGAA_-_ATGCTGGGAGGAGCCATGACTTCCATCTGCAAACATTCATCGGCGGTCATCCGTGATAGCTCAAAATTTCATACCTCATTTCAATCAAAGCCAAGTCCCCGTCTCCTCCCAAGTCAATTAAGGCGCTCTCTGGCTTTTGTGGAACGTCTAAATGGCGACCTTTTGCGCATGCGCCATAACAGTAAGACCCACGCAGTTCGGTTTTTCTGTGCTTCTCGAGCCGATGACAAAATCAAGGTGGAAAATCCCGTCGTAGAAATGGATGGTGATGAAATGACGAGGGTTATATGGCACATGATCAAGGACAAGCTGATATTTCCACATTTGGAGTTGGATTTAAAGTACTTTGACCTTGGACTTCCAAACCGAGATGCAACTAATGATAGAGTTACCGTTGAGAGTGCTGAAGCCACACTAAAGTATAATGTTGCAGTAAAGTGTGC

Fln Alignment:

biogeco2_mira_c9931___MLGGAMTSICKHSSAVIRDSSKFHTSFQSKXXXXXXXXXXXXXLAFVERLNGDLLRMRHNSKTHAVRFFCASRADDKIKVENPVVEMDGDEMTRVIWHMIKDKLIFPHLELDLKYFDLGLPNRDATNDRVTVESAEATLKYNVAVKC
A9NW62__________________MLVRAMTSMCKYSSAVFRDGSKFHTSFQSKPNARLLPSQLRRSLAFAEHLNGGLLRMRNNSKINAVRFVCAASADDKIKVENPVVEMDGDEMARVIWHMIKDKLIFPYLELDLKYFDLGLPNRDATDDRVTVESAEATLEYNVAVKC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain