SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene13041

Length: 273 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene13041
ATGGGAAAGACCTTGAATTAGAGTTCGATATACCATTTAGAGAGCTAGGTTTTCATGGAGTTCCTCATAAGGCCTCTGCTTTTATTGTTCCTACAGTTAATTGTTTGGTGGAGTTAATAGAAACTCCTTTTCTAGTGGTCACCATAAGTGAGATTGAGATTGTTAATCTGGAAAGAGTAGGGCTTGGGCAAAAGGCCTTTGATATGGCTATTGTTTCAAGGACTTCAAGCGGGAGGTCCTTCGCATTGATGCTATTCCTTCAGCTTCACTTGA

Ace file of the UniGene biog2_v2.0_unigene13041 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene362	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	FACT complex subunit n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TYN6_PHYPA	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	fact complex subunit	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	DNA replication	GO:0006260	Biological Process	90%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	90%
Blast2go	DNA repair	GO:0006281	Biological Process	90%
Blast2go	binding	GO:0005488	Molecular Function	90%
Blast2go	chromosome	GO:0005694	Cellular Component	90%
Blast2go	nucleus	GO:0005634	Cellular Component	90%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M24, structural domain	IPR000994	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Domain of unknown function DUF1747	IPR013719	-	-
Sma3	FACT complex subunit Spt16p/Cdc68p	IPR013953	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABN5

Fln msg: Distance to subject end: 160 aas, your sequence is shorter than subject: 90 - 372

Fln protein: GKDLELEFDIPFRELGFHGVPHKASAFIVPTVNCLVELIETPFLVVTISEIEIVNLERVGLGQKAFDMAIVSRTSSGRSFALMLFLQLHL

Protein Length: 91

Fln nts: ATGGGAAAGACCTTGAATTAGAGTTCGATATACCATTTAGAGAGCTAGGTTTTCATGGAGTTCCTCATAAGGCCTCTGCTTTTATTGTTCCTACAGTTAATTGTTTGGTGGAGTTAATAGAAACTCCTTTTCTAGTGGTCACCATAAGTGAGATTGAGATTGTTAATCTGGAAAGAGTAGGGCTTGGGCAAAAGGCCTTTGATATGGCTATTGTTTCAAGGACTTCAAGCGGGAGGTCCTTCGCATTGATGCTATTCCTTCAGCTTCACTTGA

Fln Alignment:

biogeco2_mira_c9919___KDLELEFDIPFRELGFHGVPHKASAFIVPTVNCLVELIETPFLVVTISEIEIVNLERVGLGQKAFDMAIV
D5ABN5__________________KDLELEFDIPFRELGFHGVPHKASAFIVPTVNCLVELIEIPFLVITISEIEIVNLERVGLGQKAFDMAIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain