SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12982

Length: 540 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12982
TAATTGATGGGTAAGAGGCATGGGATTTGAAGCATAGCATGGGATCAAAGAACATTGAACTCTGATGAATAATAAAAATTTGGACATTTCACCTCATGGAGGAACAGCCATGGGAACTCCGCATGCATTACACGCAGCTCCTGCCCCAGATACGGAACATTCATGGAACGCATGTTTTATGGAAAATAATGTGCCGTCTTCTCAGCACATTTTTCCTCGGGTACTTTCGCCAGATTCTCGGCAGGCGAACTCTTTCCGGACGGTGTCATCAGTATCTTCGGTCTCAAATGCTGGTATAGGTCACAGCCACATGTATTCGTCGGCTTCATCGTTTTGTACTAGTCTTCATCACTCATCATCCGCGGGTTCACAGCGGCAAAATCAACTCAGCGGGCTTCCGTTTCTCCCCCAGCCGTCCAAAACTCTCCTGCCGGGGTCTGCTGTGAGGTCTTCTCAGTCAGGGCTTTCTTACAGCAGCGAAGGAGGGAATTTGAGGTGCCAAGACGCCGGGACAGAGCATCCGCTGCAGGAACTTCTCAA

Ace file of the UniGene biog2_v2.0_unigene12982 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene475	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	transcription factor, putative	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	two-component response regulator arr	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	62%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPK9

Fln msg: Distance to subject end: 333 aas, your sequence is shorter than subject: 158 - 492

Fln protein: MNNKNLDISPHGGTAMGTPHALHAAPAPDTEHSWNACFMENNVPSSQHIFPRVLSPDSRQANSFRTVSSVSSVSNAGIGHSHMYSSASSFCTSLHHSSSAGSQRQNQLSGLPFLPQPSKTLLPGSAVRSSQSGLSYSSEGGNLRCQDAGTEHPLQELL

Protein Length: 159

Fln nts: TAATTGATGGGTAAGAGGCATGGGATTTGAAGCATAGCATGGGATCAAAGAACATTGAACTCTG_-_ATGAATAATAAAAATTTGGACATTTCACCTCATGGAGGAACAGCCATGGGAACTCCGCATGCATTACACGCAGCTCCTGCCCCAGATACGGAACATTCATGGAACGCATGTTTTATGGAAAATAATGTGCCGTCTTCTCAGCACATTTTTCCTCGGGTACTTTCGCCAGATTCTCGGCAGGCGAACTCTTTCCGGACGGTGTCATCAGTATCTTCGGTCTCAAATGCTGGTATAGGTCACAGCCACATGTATTCGTCGGCTTCATCGTTTTGTACTAGTCTTCATCACTCATCATCCGCGGGTTCACAGCGGCAAAATCAACTCAGCGGGCTTCCGTTTCTCCCCCAGCCGTCCAAAACTCTCCTGCCGGGGTCTGCTGTGAGGTCTTCTCAGTCAGGGCTTTCTTACAGCAGCGAAGGAGGGAATTTGAGGTGCCAAGACGCCGGGACAGAGCATCCGCTGCAGGAACTTCTCAA

Fln Alignment:

biogeco2_mira_c9851___MNNKNLDISPHGGTAMGTPHALHAAPAPDTEHSWNACFMENNVPSSQHIFPRVLSPDSRQANSFRTXXXXXXXSNAGIGHSHMYXXXXXXXXXXXXXXSAGSQRQNQLSGLPFLPQPSKTLLPGSAVRXXXXXXXXXXXXGNLRCQDAGTEHPLQEL
B8LPK9__________________MNNKNLDISPHGGTAMGTPHAFRAAPAPDTEHSWNACFIENNVPPSQHILPQVLSPDSRQANSFRTVSPVSSVSNTGIGHGHMYSSASSFCTSLHHSSSAGSQRQNQLNGLPFLPQPSKTLLPGSAVRSSQSGLSYSSEGRNLRCQEAGTEHPLQEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain