SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12925

Length: 453 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12925
GAAAATGCATTTGACGCAGTAATGCACTTCGCTGCTGTGGCTTATGTGGGCGAGAGCACAATGGATCCTCTTAGGTACTATCATAACATTACATCCAATACATTGACAGTATTAGAAGCCATGGCTGCGCATGGGGTGAAGAAACTGATATATTCAAGCACATGTGCAACTTATGGGGAACCTGCTAAAATGCCTATTACAGAGGAAACTCCTCAGGTTCCTATAAATCCATATGGAAAAGCAAAGAAAATGGCAGAGGACATTATCCAAGATTTTTCAAGAAAATCAAACATGGCTGTTATGCTATTGAGGTATTTCAATGTAATTGGTTCAGATCCAGAGGGCAGGTTAGGGGAAGCACCAAGACCAGAACTTCGGGAACATGGACGAATCTCGGGTGCATGCTTCGATGCAGCCAGGGGAATTATTCCTGGATTGAAAGTTAGAGGAACA

Ace file of the UniGene biog2_v2.0_unigene12925 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene13657	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-arabinose 4-epimerase [Arabidopsis thaliana] ref\|NP_001031118.1\| UDP-arabinose 4-epimerase [Arabidopsis thaliana] sp\|Q9SA77.1\|ARAE1_ARATH RecName: Full=UDP-arabinose 4-epimerase 1; AltName: Full=UDP-D-xylose 4-epimerase 1 gb\|AAD25749.1\|AC007060_7 Stro	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	udp-arabinose 4-epimerase	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-arabinose 4-epimerase.	EC:5.1.3.5	-	0.0	86%

Source	KEGGs	Term	Type	Identity
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		86%
Blast2go	Metabolic pathways	01100		86%
Blast2go	UDP-glucose 4-epimerase.	EC:5.1.3.2	-	86%

Source	KEGGs	Term	Identity
Blast2go	Galactose metabolism	00052	86%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	86%
Blast2go	Metabolic pathways	01100	86%

Source	GOs	Term	Type	Identity
Blast2go	arabinose biosynthetic process	GO:0019567	Biological Process	86%
Blast2go	nucleotide-sugar metabolic process	GO:0009225	Biological Process	86%
Blast2go	plant-type cell wall biogenesis	GO:0009832	Biological Process	86%
Blast2go	galactose metabolic process	GO:0006012	Biological Process	86%
Blast2go	UDP-arabinose 4-epimerase activity	GO:0050373	Molecular Function	86%
Blast2go	UDP-glucose 4-epimerase activity	GO:0003978	Molecular Function	86%
Blast2go	coenzyme binding	GO:0050662	Molecular Function	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%
Blast2go	mitochondrion	GO:0005739	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	UDP-glucose 4-epimerase	IPR005886	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LME8

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 151 - 296

Fln protein: ENAFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFSRKSNMAVMLLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAARGIIPGLKVRGT

Protein Length: 152

Fln nts: GAAAATGCATTTGACGCAGTAATGCACTTCGCTGCTGTGGCTTATGTGGGCGAGAGCACAATGGATCCTCTTAGGTACTATCATAACATTACATCCAATACATTGACAGTATTAGAAGCCATGGCTGCGCATGGGGTGAAGAAACTGATATATTCAAGCACATGTGCAACTTATGGGGAACCTGCTAAAATGCCTATTACAGAGGAAACTCCTCAGGTTCCTATAAATCCATATGGAAAAGCAAAGAAAATGGCAGAGGACATTATCCAAGATTTTTCAAGAAAATCAAACATGGCTGTTATGCTATTGAGGTATTTCAATGTAATTGGTTCAGATCCAGAGGGCAGGTTAGGGGAAGCACCAAGACCAGAACTTCGGGAACATGGACGAATCTCGGGTGCATGCTTCGATGCAGCCAGGGGAATTATTCCTGGATTGAAAGTTAGAGGAACA

Fln Alignment:

biogeco2_mira_c9782___FDAVMHFAAVAYVGESTMDPLRYYHNITSNTLTVLEAMAAHGVKKLIYSSTCATYGEPAKMPITEETPQVPINPYGKAKKMAEDIIQDFSRKS-NMAVMLLRYFNVIGSDPEGRLGEAPR
B8LME8__________________FDAVIHFAGLKAVGESVAKPLLYYKNNIVGTINLLETMVSHGCKKLVFSSSATVYGQPKEVPCTEDFPICAMNPYGRTKLFIEEICRDVHRADPDWKIILLRYFNPVGAHPSGFIGEDPR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain