SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12900

Length: 512 nt

UniGene Fasta

>biog2_v2.0_unigene12900
GATTTTCCTGGGCAAAGAATCTAGGGGAAACAGATTCCTGATACGTAGATTTACTGGAATTATGACGGGTTCCTGTGATGATTACGAAGAAAGGATTCCTGATGTATTGCCTGTAGGATCCATGCCCATTATGCGAGTGGAACCTCAAAGGGCCCGTTTTCCTTGTTGTCTAGTATGGACACCTTTACCAATAGTTTGATGGTTGGCACCGTTTATTGGTCATATGGGTATATGTCAGGAAGATGGCACCATTTTGGACTTTGCAGGGTCTTACTTTGTGAATGTTAATAACTTTGCATTTGGGGCAACTGCAAGATACGTTCAACTTAGCACACAACAGTGTTGCTTCCCCCCTCATTTATCTGGACACAAATGCAAACATGGATTCAGACATGCAGAACTGGGGACAGCTATGTCATGGGACAATGCTCTTCAAAGTTGTACGAATCATTTCCAGCACAAAACTTATAATCTGTTCACCTGTAATTGCCATTCCTTTGTAGCAAATTGTC

Ace file of the UniGene biog2_v2.0_unigene12900

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7894	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	DUF778 domain containing protein	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	70%
Blast2go	transmembrane protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	negative regulation of ethylene mediated signaling pathway	GO:0010105	Biological Process	81%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	81%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein of unknown function DUF778	IPR008496	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9H0

Fln msg: Distance to subject end: 83 aas, your sequence is shorter than subject: 150 - 237

Fln protein: MTGSCDDYEERIPDVLPVGSMPIMRVEPQRARFPCCLVWTPLPIV*WLAPFIGHMGICQEDGTILDFAGSYFVNVNNFAFGATARYVQLSTQQCCFPPHLSGHKCKHGFRHAELGTAMSWDNALQSCTNHFQHKTYNLFTCNCHSFVANC

Protein Length: 151

Fln nts: GATTTTCCTGGGCAAAGAATCTAGGGGAAACAGATTCCTGATACGTAGATTTACTGGAATT_-_ATGACGGGTTCCTGTGATGATTACGAAGAAAGGATTCCTGATGTATTGCCTGTAGGATCCATGCCCATTATGCGAGTGGAACCTCAAAGGGCCCGTTTTCCTTGTTGTCTAGTATGGACACCTTTACCAATAGTTTGATGGTTGGCACCGTTTATTGGTCATATGGGTATATGTCAGGAAGATGGCACCATTTTGGACTTTGCAGGGTCTTACTTTGTGAATGTTAATAACTTTGCATTTGGGGCAACTGCAAGATACGTTCAACTTAGCACACAACAGTGTTGCTTCCCCCCTCATTTATCTGGACACAAATGCAAACATGGATTCAGACATGCAGAACTGGGGACAGCTATGTCATGGGACAATGCTCTTCAAAGTTGTACGAATCATTTCCAGCACAAAACTTATAATCTGTTCACCTGTAATTGCCATTCCTTTGTAGCAAATTGTC

Fln Alignment:

biogeco2_mira_c9753___MTGSCDDYEERIP-DVLPVGSMP---IMRVEPQRARFPCCLVWTPLPIV*WLAPFIGHMGICQEDGTILDFAGSYFVNVNNFAFGATARYVQLSTQQCCFPPHLSGHKCKHGFRHAELGTAMSWDNALQSCTNHFQHKTYNLFTCNCHSFVANC
D5A9H0__________________MEGSHDEDEEMCSNDKLLPASLPRAAVAQVDLERARFPCCVVWTPLPIVSWLAPFIGHMGICREDGVILDFAGPNFVSVDDFAFGAVARYIQLSKQQCCFPMHLSGHSCKSGFKHTELGTSISWDDALDSSTQHFQHKSYNLFTCNCHSFVANC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain