SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12882

Length: 349 nt

UniGene Fasta

>biog2_v2.0_unigene12882
ATGGGGGTCCCTTTTTGGACCACCTCGATACCTCGCTGGTCTCTTTGTCCAAACTTGCAGAGGAACATTTCAGAAGCTGCATTGTTCCCATAGGCCGATCATGTCCACGACGAGCATTGACAGCGGCACACATATTTCCGGAGTCCCTTTTTTAAGCAATGCCGAAGAACTGATAAATTCGGTGCAGACTTTCCTTTTGACTGCGACGGTGTCATATGGAAGGGCGAAAAGCTGATCGATGGCGTACCGGAAACCTTAGACATGCTTCGGTCGCGGGGTAAGAAAGTTGTTTTCATGACAAACAACTCAACGAAGTCTCGAAAACAATACAGGAAGAAGTTCGAAGCGC

Ace file of the UniGene biog2_v2.0_unigene12882

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene33155	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	4-nitrophenylphosphatase, putative n=1 Tax=Ricinus communis RepID=B9RM24_RICCO	-	-	1.0e-37	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	2-phosphoglycolate phosphatase 1	-	-	0.0	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Phosphoglycolate phosphatase.	EC:3.1.3.18	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Glyoxylate and dicarboxylate metabolism	00630		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	phosphoglycolate phosphatase activity	GO:0008967	Molecular Function	89%
Blast2go	vacuole	GO:0005773	Cellular Component	89%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%
Blast2go	apoplast	GO:0048046	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	2-phosphoglycolate phosphatase, eukaryotic	IPR006349	-	-
Sma3	HAD-superfamily hydrolase, subfamily IIA	IPR006357	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9T8

Fln msg: Overlapping hits, possible frame ERROR between 196 and 136, Distance to subject end: 228 aas, your sequence is shorter than subject: 83 - 311

Fln protein: MSTTSIDSGTHxxxxxxxxxxxxxxxxxxxxxxDCDGVIWKGEKLIDGVPETLDMLRSRGKKVVFMTNNSTKSRKQYRKKFEA

Protein Length: 84

Fln nts: ATGGGGGTCCCTTTTTGGACCACCTCGATACCTCGCTGGTCTCTTTGTCCAAACTTGCAGAGGAACATTTCAGAAGCTGCATTGTTCCCATAGGCCGATC_-_ATGTCCACGACGAGCATTGACAGCGGCACACATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGACTGCGACGGTGTCATATGGAAGGGCGAAAAGCTGATCGATGGCGTACCGGAAACCTTAGACATGCTTCGGTCGCGGGGTAAGAAAGTTGTTTTCATGACAAACAACTCAACGAAGTCTCGAAAACAATACAGGAAGAAGTTCGAAGCGC

Fln Alignment:

biogeco2_mira_c9733___MSTTSIDSGTHIxxxxxxxxxxxxxxxxxxxxFDCDGVIWKGEKLIDGVPETLDMLRSRGKKVVFMTNNSTKSRKQYRKKFEA
D5A9T8__________________MSTTNIDSAAQIxxxxxxxxxxxxxxxxxxxxFDCDGVLWKGEKLIDGVPETLDMLRSRGKKVVFMTNNSTKSRKQYRKKFEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain