SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12844

Length: 349 nt

UniGene Fasta

>biog2_v2.0_unigene12844
ATGGGGACTCTAGTGGATCGAATGGAGTTGTCGCTAAAGATCGAAGGAGGAGAAGAAAAATCAGAGAGGGTGGTCGTTCAGGGCGGAAGATTATAAGCCAATCAAACGCAGAGAGGACGAGCCGACAATTTCCTTCACTTGCTTTCATCTGTGGGAGAAATGGCCCTTTTAATACCTGTGGAACAGGTCATGCTGGTCCACATAAACCTCTGCAGTACTTGGATACACATCGGCCATGGTTAAGTTTGTATGGAACAAGAGTTCGACCAGTTCCTGCTTTTGGAAGCTTGAGCAATAAGCCTGCTTCTGACCCAGCTCTAATACACCGGATTTTACCTTGATGAGCTGC

Ace file of the UniGene biog2_v2.0_unigene12844

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene1744	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	F-box protein 7 n=2 Tax=Arabidopsis RepID=SKI32_ARATH	-	-	66%
FL-Next	sp=F-box protein 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	66%
Blast2go	f-box protein	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	79%
Blast2go	regulation of translation	GO:0006417	Biological Process	79%
Blast2go	response to heat	GO:0009408	Biological Process	79%
Blast2go	protein binding	GO:0005515	Molecular Function	79%
Blast2go	nucleus	GO:0005634	Cellular Component	79%
Blast2go	mitochondrion	GO:0005739	Cellular Component	79%
Blast2go	pollen tube	GO:0090406	Biological Process	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9XI00

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 261 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 113 - 328

Fln protein: GDSSGSNGVVAKDRRRRRKIREGGRSGRKIISQSNAERTSRQFPSLAFICGRNGPFNTCGTGHAGPHKPLQYLDTHRPWLSLYGTRVRPVPAFGSLSNKPASDPALIHRILP*

Protein Length: 114

Fln nts: _-_ATGGGGACTCTAGTGGATCGAATGGAGTTGTCGCTAAAGATCGAAGGAGGAGAAGAAAAATCAGAGAGGGTGGTCGTTCAGGGCGGAAGATTATAAGCCAATCAAACGCAGAGAGGACGAGCCGACAATTTCCTTCACTTGCTTTCATCTGTGGGAGAAATGGCCCTTTTAATACCTGTGGAACAGGTCATGCTGGTCCACATAAACCTCTGCAGTACTTGGATACACATCGGCCATGGTTAAGTTTGTATGGAACAAGAGTTCGACCAGTTCCTGCTTTTGGAAGCTTGAGCAATAAGCCTGCTTCTGACCCAGCTCTAATACACCGGATTTTACCTTGATGAGCTGC

Fln Alignment:

biogeco2_mira_c9689___KPLQYLDTHRPWLSLYGTRVRPVPAFGSLSNKPASDPALIHRILP
Q9XI00__________________RTVQYFITKRPWLDLYGVHVRPVPPFGSTSRKPHFDPALIHRCLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain