SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12814

Length: 309 nt

UniGene Fasta

>biog2_v2.0_unigene12814
ATGGGGTGGCCCTGATTGCAAAATAACATTGACCACCTATCTCTACGATCATCTTGGCAACCATAGATTGAGAGAATTTCTGGATGAGCAAGAATTGCAAGAGGGAGATCACCTTAACTTCTCAAATAGAAGAAGCTATTGGAACACCCTCAGTCCATATCGCGATTTTCTCTCCTAGATATGCCGAATCAAATTGGTGTTTCAAAGAGATCGTGTTGAAGGTGGAGTTTACGGCAACTATCATTCAAGTCTTTTACAGTGTCCAGCCATCAGAACTTCGGTGGACACAGCGTGAAACAAGACTGTATG

Ace file of the UniGene biog2_v2.0_unigene12814

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31034	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative TIR/NBS/LRR disease resistance protein (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8I7_PINTA	-	-	3.0e-19	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	tir nbs lrr disease resistance protein	-	-	5.14807e-21	64%

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRB4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 440 aas, your sequence is shorter than subject: 102 - 579

Fln protein: GVALIAK*H*PPISTIILATID*ENFWMSKNCKREITLTSQIEEAIGTPSVHIAIFSPRYAESNWCFKEIVLKVEFTATIIQVFYSVQPSELRWTQRETRLY

Protein Length: 103

Fln nts: ATGGGGTGGCCCTGATTGCAAAATAACATTGACCACCTATCTCTACGATCATCTTGGCAACCATAGATTGAGAGAATTTCTGGATGAGCAAGAATTGCAAGAGGGAGATCACCTTAACTTCTCAAATAGAAGAAGCTATTGGAACACCCTCAGTCCATATCGCGATTTTCTCTCCTAGATATGCCGAATCAAATTGGTGTTTCAAAGAGATCGTGTTGAAGGTGGAGTTTACGGCAACTATCATTCAAGTCTTTTACAGTGTCCAGCCATCAGAACTTCGGTGGACACAGCGTGAAACAAGACTGTATG

Fln Alignment:

biogeco2_mira_c9657___FWMSKNCKREITLTSQIEEAIGTPSVHIAIFSPRYAESNWCFKEIVLKVEFTATIIQVFYSVQPSELRWTQ
B8LRB4__________________FLDQQELERGENMTPQIEGAIRTASIHIAIFSPTYAESSWCLKELVMMLESGSTIIPVFYHVRPCELRWTR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain