SustainPineDB

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Assembly info
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12768

Length: 266 nt

UniGene Fasta

>biog2_v2.0_unigene12768
TCTCTGCTATGTTGGAAAGCTTGACTTTGCAGATAAAGGCGGCAGGGTATACACCTGAGACAGATTTTGTTTTTGCATGATGTCGAGGAGGAAGAGAAGGAGTATATTCTTTGTGGTCATAGCGAGAAACTAGCTTTAGCTTTTGGGCTTATGAACACATATCCTGGCACTCCTATCCGAATCAGTAAGAACCTCCGGGTNTGTGGTGACTGTCACAGTGCAATTAAGTTTATATCCAACATTGTTGGAAGAAGAGATAATTGTGA

Ace file of the UniGene biog2_v2.0_unigene12768

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene55329	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	1.0e-22	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	pentatricopeptide repeat protein	-	-	2.04375e-27	86%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Thiamine biosynthesis protein ThiC	IPR002817	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P0W0

Fln msg: Separated hits, possible frame ERROR between 71 and 73, Distance to subject end: 19 aas, your sequence is shorter than subject: 88 - 370

Fln protein: SAMLESLTLQIKAAGYTPETDFxxLHDVEEEEKEYILCGHSEKLALAFGLMNTYPGTPIRISKNLRVCGDCHSAIKFISNIVGRRDNC

Protein Length: 89

Fln nts: TCTCTGCTATGTTGGAAAGCTTGACTTTGCAGATAAAGGCGGCAGGGTATACACCTGAGACAGATTTTGTxxxTTTGCATGATGTCGAGGAGGAAGAGAAGGAGTATATTCTTTGTGGTCATAGCGAGAAACTAGCTTTAGCTTTTGGGCTTATGAACACATATCCTGGCACTCCTATCCGAATCAGTAAGAACCTCCGGGTaTGTGGTGACTGTCACAGTGCAATTAAGTTTATATCCAACATTGTTGGAAGAAGAGATAATTGTGA

Fln Alignment:

biogeco2_mira_c9599___LESLTLQIKAAGYTPETDFVxLHDVEEEEKEYILCGHSEKLALAFGLMNTYPGTPIRISKNLRVCGDCHSAIKFISNIVGR
A9P0W0__________________LETLTLQMKAAGYIPNTNFVxLHDVEEEQKEWILGHHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain