SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12714

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12714
CTATTGTGTGGTGATACCTACAACTGTATTGGTTCCCGAAGTTCAATTGCCAAAATGGGGAGCTGTCTACATTCCTTCGACTATCACTTTATTAAATGCAGTGAGCACCCCTAGGTCGTTACATCTGCTGGTATTCTGGATTTTGTTTGAAAACGTGATGTCCCTGCACCGAACCAAGGCAACCATCATCGGATTATTTGAAGCAGGGCGTGTGAACGAGTGGGTTGTGACTGAGAAATTAGGAGATGCCTTAG

Ace file of the UniGene biog2_v2.0_unigene12714 (antisense)

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2300	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Cellulose synthase-like A2 n=1 Tax=Pinus taeda RepID=A3QT95_PINTA	-	-	99%
FL-Next	tr=Cellulose synthase-like A2; Pinus taeda (Loblolly pine).	-	-	100%
Blast2go	glucomannan 4-beta-mannosyltransferase 9-like	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	response to bacterium	GO:0009617	Biological Process	90%
Blast2go	DNA mediated transformation	GO:0009294	Biological Process	90%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	90%
Blast2go	mannan synthase activity	GO:0051753	Molecular Function	90%

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 2	IPR001173	-	-
Sma3	SecY protein	IPR002208	-	-
Sma3	Ribosomal protein L18/L5	IPR005484	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A3QT95

Fln msg: Distance to subject end: 71 aas, your sequence is shorter than subject: 84 - 534

Fln protein: YCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLGDAL

Protein Length: 85

Fln nts: CTATTGTGTGGTGATACCTACAACTGTATTGGTTCCCGAAGTTCAATTGCCAAAATGGGGAGCTGTCTACATTCCTTCGACTATCACTTTATTAAATGCAGTGAGCACCCCTAGGTCGTTACATCTGCTGGTATTCTGGATTTTGTTTGAAAACGTGATGTCCCTGCACCGAACCAAGGCAACCATCATCGGATTATTTGAAGCAGGGCGTGTGAACGAGTGGGTTGTGACTGAGAAATTAGGAGATGCCTTAG

Fln Alignment:

biogeco2_mira_c9535___YCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLGDAL
A3QT95__________________YCVVIPTTVLVPEVQLPKWGAVYIPSTITLLNAVSTPRSLHLLVFWILFENVMSLHRTKATIIGLFEAGRVNEWVVTEKLGDAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain