SustainPineDB

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Assembly info
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12659

Length: 291 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>biog2_v2.0_unigene12659
ATGGGTACCTTCCCTTCAAACAAATGCAGAATGGCATATGTTCCTTGACCCTTATGCAGCAAAGCAGGTTATCGCAACAAAGCTTAACATTACATTAATTCCTCTCAACGTCCAACGCAAAGCTTCATCCTTTGAAAAACTCATAAAAGGGCTAGAGATGTCGAAGGAGACACCTGAAGCAGTGTTTATACATCGCCTACTTACAACAATGGAGCACCTGTATTGCAGTCAGCATGTGTATAACCATTTAGACATGTTTTGGGAGAAGTCCTAGGCGCGGTGACCATGATA

Ace file of the UniGene biog2_v2.0_unigene12659 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5355	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Os05g0406200 protein n=3 Tax=Oryza sativa Japonica Group RepID=Q0DI96_ORYSJ	-	-	53%
FL-Next	tr=Putative uncharacterized protein Sb09g020040; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	48%
Blast2go	pyrimidine-specific ribonucleoside hydrolase riha	-	-	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	70%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protease inhibitor I4, serpin	IPR000215	-	0.0	-
Sma3	Inosine/uridine-preferring nucleoside hydrolase domain	IPR001910	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5YXR8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 85 aas, your sequence is shorter than subject: 91 - 846

Fln protein: WVPSLQTNAEWHMFLDPYAAKQVIATKLNITLIPLNVQRKASSFEKLIKGLEMSKETPEAVFIHRLLTTMEHLYCSQHVYNHLDMFWEKS*

Protein Length: 92

Fln nts: ATGGGTACCTTCCCTTCAAACAAATGCAGAATGGCATATGTTCCTTGACCCTTATGCAGCAAAGCAGGTTATCGCAACAAAGCTTAACATTACATTAATTCCTCTCAACGTCCAACGCAAAGCTTCATCCTTTGAAAAACTCATAAAAGGGCTAGAGATGTCGAAGGAGACACCTGAAGCAGTGTTTATACATCGCCTACTTACAACAATGGAGCACCTGTATTGCAGTCAGCATGTGTATAACCATTTAGACATGTTTTGGGAGAAGTCCTAGGCGCGGTGACCATGATA

Fln Alignment:

biogeco2_mira_c9474___AEWHMFLDPYAAKQVIATKLNITLIPLNVQRKASSFEKLIKGLEMSKETPEAVFIHRLLTTMEHLYCSQHVYNHLDMF
C5YXR8__________________AEFNMFLDPLAAKTVLESSLDITLIPLSSQRKAASFQRILQALKHADHTPESSFVHRLLLSLHDLQQKHGLYHHMDIF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain