SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: biogeco2 v2.0

UniGene Name: biog2_v2.0_unigene12651

Length: 284 nt

UniGene Fasta

>biog2_v2.0_unigene12651
ATGTGATTGGAGATGTAATGCTATTTTTGGGCAAGTTGTGTGTGAGCCTTGCATGTGCTTTGTTTGCTTTCCTTATGCTGGATACACATCAGTACAAGTCTTCTCATCATAAGATATCATCCCCATTGTTTCCAGTATTGTTTTGTTGGGGCCTTGGATATGTTGTGGCTTCTCTTTTTTTCGCTGTGGTGGAGATGGCCATTGATACAATTGTATTGTCCTTCTGCCAAGATGTGGAAGAGCATCAGGGCAACCCACAGTATGCACCTCCTCTTCTTATGGAG

Ace file of the UniGene biog2_v2.0_unigene12651

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3238	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_14.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=E0CSM5_VITVI	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	81%
Blast2go	choline transporter-like protein 2-like	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Sma3	Choline transporter-like	IPR007603	-	0.0	-
Sma3	Phospholipase A2, active site	IPR013090	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: E0CSM5

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 94 - 697

Fln protein: VIGDVMLFLGKLCVSLACALFAFLMLDTHQYKSSHHKISSPLFPVLFCWGLGYVVASLFFAVVEMAIDTIVLSFCQDVEEHQGNPQYAPPLLME

Protein Length: 95

Fln nts: ATGTGATTGGAGATGTAATGCTATTTTTGGGCAAGTTGTGTGTGAGCCTTGCATGTGCTTTGTTTGCTTTCCTTATGCTGGATACACATCAGTACAAGTCTTCTCATCATAAGATATCATCCCCATTGTTTCCAGTATTGTTTTGTTGGGGCCTTGGATATGTTGTGGCTTCTCTTTTTTTCGCTGTGGTGGAGATGGCCATTGATACAATTGTATTGTCCTTCTGCCAAGATGTGGAAGAGCATCAGGGCAACCCACAGTATGCACCTCCTCTTCTTATGGAG

Fln Alignment:

biogeco2_mira_c9466___VIGDVMLFLGKLCVSLACALFAFLMLDTHQYKSSHHKISSPLFPVLFCWGLGYVVASLFFAVVEMAIDTIVLSFCQDVEEHQGNPQYAPPLLME
E0CSM5__________________VIGDVILFLGKLCVSLSSAVFAFLMLDTHKYRSAHNKISSPLFPVLVCWGLGYVVATLFFGVVEMSIDTIILSFCQDSEEHQGTAQYAPPLLIE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain